| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1616 |
|---|
| Symbol | |
|---|
| ID | 5709004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 1688673 |
|---|
| End bp | 1689287 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641276124 |
|---|
| Product | tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit |
|---|
| Protein accession | YP_001541429 |
|---|
| Protein GI | 159042177 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain |
|---|
| TIGRFAM ID | [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.458541 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTACGT ATTATTTAAA GACCCCGATA AGCGATAGTG ATGTTGAGAA GCTTAACATC
GGTGATACAG TCTACGTAAG CGGTGTACTG GTAAGCGCCA GGGATGCTGC ACACGTTAGG
ATCATTGAAC ACATAAGGAA GGGTGAACCA TTACCCGTTG ACTTGAGAGG TGGTGTCATT
TACCATGCTG GCCCAGTGGC TGTTAAGGAG GGTGATTCAT GGAGGATAAT AAGCATGGGT
CCAACAACCA GCGCCAGGAT GGAGGAGTTT GAACCTGAGG TTATTGAGAA GCTTGGGGTT
AAGTTAATAA TAGGGAAGGG TGGAATGGGG CCTAAGACCA CTGAAGCCAT GAGGAGGTTT
AAGGCATCAT ACCTAATATT CACCGGTGGA GCCGGTGTAC TGGCCGCTAA GGCAATTAAG
AGGGTTATTG GTGTTCATTG GCTTGACCTA GGGGCCGCTG AAGCCATGTG GATTCTCGAG
GTTGAGAACT TCGGCCCATT ATCAGTAATA ATTGACTCAA AGGGTAATAA TTACTACGAG
GATTTAAGGA GGAAGGCCAG GGAGAGGATT GAGGAGGCTG TTAAGGATGC CTTAGGCAGT
ATCCCACGCC TCTAA
|
|---|
| Protein sequence | MPTYYLKTPI SDSDVEKLNI GDTVYVSGVL VSARDAAHVR IIEHIRKGEP LPVDLRGGVI
YHAGPVAVKE GDSWRIISMG PTTSARMEEF EPEVIEKLGV KLIIGKGGMG PKTTEAMRRF
KASYLIFTGG AGVLAAKAIK RVIGVHWLDL GAAEAMWILE VENFGPLSVI IDSKGNNYYE
DLRRKARERI EEAVKDALGS IPRL
|
|---|
| |