| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1473 |
|---|
| Symbol | |
|---|
| ID | 5709531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 1550463 |
|---|
| End bp | 1551029 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641275982 |
|---|
| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| Protein accession | YP_001541287 |
|---|
| Protein GI | 159042035 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
|---|
| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0401457 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.0920932 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTTCC TTAGCTTTAA GAGACTGGAA ATACCTGACG TTATTTTAAT AGAGTATCAA
CGCTTCCCGG ACCATAGGGG TTTCTTTGCT GAGCTTTGGA AGCGAACCGA CTTCCTAGCT
AATGGGGTGT TCTATGACTT CACTCAATTG AGTACATCAG TCTCAAGGAG GGGTGTGGTT
AGGGGTCTTC ATTATCAGCT TAAGCCCATG GAGCAGGGTA AGTTGGTGAC TGTACTGAGG
GGTCGTGTGA TTGATGTGGC TGTTGATGTA CGTAAGGGTT CTCCCTGGTT CGGTAAGCAT
GTGGCCGTGG AGTTGAGCAC CAATGAACCA AGGCTACTCT GGGTGCCTCC CGGCTTCGCC
CATGGTTTCC AGGCCCTTGA GGACGACACA GTATTCCTCT ACCTAATGAC TAAGGAGTAT
AGTCCGCAAC ACGAGAGGTG CGTGAAATGG GATGACCCTG AGTTAGGCAT TGAATGGCCA
ATTAGAAGTA ATGTAATAAT CAGTGAAAAG GACTCCAAGT GCCCACCCCT CAAGGCCGCT
GAAACAAACT TCAACTACCC AATATAA
|
|---|
| Protein sequence | MPFLSFKRLE IPDVILIEYQ RFPDHRGFFA ELWKRTDFLA NGVFYDFTQL STSVSRRGVV
RGLHYQLKPM EQGKLVTVLR GRVIDVAVDV RKGSPWFGKH VAVELSTNEP RLLWVPPGFA
HGFQALEDDT VFLYLMTKEY SPQHERCVKW DDPELGIEWP IRSNVIISEK DSKCPPLKAA
ETNFNYPI
|
|---|
| |