| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1424 |
|---|
| Symbol | |
|---|
| ID | 5709294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 1503569 |
|---|
| End bp | 1505908 |
|---|
| Gene Length | 2340 bp |
|---|
| Protein Length | 779 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641275934 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001541239 |
|---|
| Protein GI | 159041987 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0120501 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGGG TCATGAAGGC AGTAATACTA CTCCTTGCAG TAACACTACT GGTGACTACC
GTGGTTTATG CGCAGCAGAC TTTCACAGTT ATTAATGCTG AATCAAGCAC GTACATATAT
GCACCTGGAA TACCAGTGTT CAACCCCTAC ACACCCAGTA ATCTAGTGGG TGTTGTTTCC
ACGTGGGTTC CCCTAGCGTT CTATAACCCA GTTACTAATC ATTTCTGGCC TATTCTTGCT
GAGAATTGGA CTATTCAGGT TTTGCCTAAT GGTTCAGGTA TTTTGACTGT TTACCTTAGG
AGGGGCTTGT ATTGGTTTAA TGGTTCAGCG GTAATGCCTT TCACTGCTTG GGATGTTTAC
ACATACTTCT ATATTGGTGT TAAGGCGTTT AAATGGTACT ACCCATACAT GTTACCTCAA
TATGCTGATG AAGACATTAG GGTATTGGAT AACTATACTA TTCAATTCCT ATTCCAGAAA
TGGAGCCCAA CAGAGTGGAT ATTCTTGCTA GCAAGCCAGA TTAGTACACC ATACTCAGTA
TGGGAACCAA TAGTGGATAA ACTCAAAACA ATGAACGTTA CTCAGACGGC AAAGTACTCA
ACGAACGTAA CGGAGTTTGT ACCACCGTAC TGGGGTTTAA GCCCATACTA CTTAACCTTC
ATTAGCACTA ATACTGTTGT TGAGAAGCTT GAGCCCATGT ACTTTAACGG TAAGCCGTTA
TTAGCCATTT GGGATGAATT ATTCCCATTC AACACATTCA ACTACTACCC TGAAGTAGAG
TCAGTGTACC CTGGTGGTAA TACTCAAGAC TTAGCCCTTG AAATCGCTGG TAAGGCTAAT
TGGGCATACG TTGGCTTATC ATCACAGCAG ATAGAGACAG CAATGCAGCA TGGGTTTAAG
AACATTAACC TTTACGCATG GTCAACCTAC GCTATCGCCA TTAACGCCTA CAACTTCCCA
ACCAATAACA TGTGGCTTAA CCTTAAGTTT AGGCAAGCAT TATTATGGGT CCTTAATAGG
ACTGAAATGG CAGCTGCATG GGGCTTACCT GGTGTACCTA ATTCATCATG GATACTGCCT
CTATGGCGTA ACATACCAAG CCCAGACTAC ATACTCTCCA CGTATCCTCA GCCAATACAG
AACATGGTGT ATGATTACAT GACGTATACC GTTAATTGGA CTAAGGCCGC TGAAATACTT
GAGAGTGCTG GTTTCTATGA GAAGAATGGG CAATGGTATA CTCCAGGTGG TCAACCAATT
AAGATGACGC TAATGATGCC TGCCCAATTC ACTAACCAGG TCGCCGCTGT TTCTAATGCT
GCGGAGCAGT TTAGTATCTT TGGTATACCA ACCACTACAC TTGCTGAGGA TGTTGCAACA
TACTCAAGTC ATATACTGAT AACTGGTGAT TACCAGGCTG CTGATTACTT CGGGCCTGGT
TTAGTAAGTT ACTACACTGG TTGGTCAATG TGGGTTAATC CCTTCGACAG TAACCTATTC
ATAAACACAT CATTGCCTTA CCCATTCCAG TGGCCTAATG GAACATGCAC ACCAGTGACG
TTATCATTAC CCATGCCTAA CTCCACTATA GTTACATGCA TTAACTCAAC CCTCGGTTGG
ATTAACATAA CCAATGCTGA GTACGCCTTC TACTCAGCCG TACCAGGTAG TCCACAGTAT
GAGGAGGCTG TGGAGGTATT GTTTGCATGG TGGAATTACT TTGTGCCTCA ACTAGAGTGG
GGTGAGAAGC TTGAGCCGCA GCAGTGGGAT CCTAATGTAT TTGACTTGGA TTGGGCGTAT
GAATGCTCCA ATGCACCAAC CGTTAATATG GCTATTGGTC CAGCCAACCT AATAGCTCAA
TACGTGGTTA TGCCGCCTCA GCAGGTTTGG GGTGTTCCAG GTGTTTCAGG TGGCGTTTGG
ATGCCTGGTC CATTATACTT CGGTGGTGTT GTTCCTCCTG GCGTAATACC ACCATTAGCG
GAAGCTATGC TTAATGGTTC ACTTTGGACT AAGTACGCCA ATTACGCAAA CTTCCTCGGC
ATAACACCAG GCAGCTTTAA CTTAGCTTGC GTTGCATCGT ACTTCCATAC AATATACACT
CCAGTAACCG CATCAACCAC TACCTCAACA ACCACTGTTA CTTCAACTGC TGTTGCTACT
GTGACTAGTA CTGCCACTGT AACATCAACA AGCACAGTAG TAAGCACAAC AACCACTACG
GCTGTAAGCA CAGTAACAAT CACTAAACCA GTAGTATCAA CAACACTAGT AATAGGAATA
GTAATCATAG TAATAGTCAT AGCAGCAGTA GCAGCAATAA TAGTGTTAAG GAGGAGGTAA
|
|---|
| Protein sequence | MSGVMKAVIL LLAVTLLVTT VVYAQQTFTV INAESSTYIY APGIPVFNPY TPSNLVGVVS
TWVPLAFYNP VTNHFWPILA ENWTIQVLPN GSGILTVYLR RGLYWFNGSA VMPFTAWDVY
TYFYIGVKAF KWYYPYMLPQ YADEDIRVLD NYTIQFLFQK WSPTEWIFLL ASQISTPYSV
WEPIVDKLKT MNVTQTAKYS TNVTEFVPPY WGLSPYYLTF ISTNTVVEKL EPMYFNGKPL
LAIWDELFPF NTFNYYPEVE SVYPGGNTQD LALEIAGKAN WAYVGLSSQQ IETAMQHGFK
NINLYAWSTY AIAINAYNFP TNNMWLNLKF RQALLWVLNR TEMAAAWGLP GVPNSSWILP
LWRNIPSPDY ILSTYPQPIQ NMVYDYMTYT VNWTKAAEIL ESAGFYEKNG QWYTPGGQPI
KMTLMMPAQF TNQVAAVSNA AEQFSIFGIP TTTLAEDVAT YSSHILITGD YQAADYFGPG
LVSYYTGWSM WVNPFDSNLF INTSLPYPFQ WPNGTCTPVT LSLPMPNSTI VTCINSTLGW
INITNAEYAF YSAVPGSPQY EEAVEVLFAW WNYFVPQLEW GEKLEPQQWD PNVFDLDWAY
ECSNAPTVNM AIGPANLIAQ YVVMPPQQVW GVPGVSGGVW MPGPLYFGGV VPPGVIPPLA
EAMLNGSLWT KYANYANFLG ITPGSFNLAC VASYFHTIYT PVTASTTTST TTVTSTAVAT
VTSTATVTST STVVSTTTTT AVSTVTITKP VVSTTLVIGI VIIVIVIAAV AAIIVLRRR
|
|---|
| |