| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1328 |
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| Symbol | |
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| ID | 5710122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | + |
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| Start bp | 1402417 |
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| End bp | 1404621 |
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| Gene Length | 2205 bp |
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| Protein Length | 734 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641275835 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001541144 |
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| Protein GI | 159041892 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0036093 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.504414 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATGA ATGGAATCTC CAGGAGTGTT TTGGCTGCTG TGGTTGTGGT TGTTGTGGTT
GTTGCTGTGG CTGGTTATGT GGGGTATTAT TATGCGACTC ATCCTAAGGT TGTTACGACT
ACTGTGGTTT CAACGTCAGC CACAACAGTA ACCACCACAA CAGCCGTAAC CACAACAACC
GCTACAACAG TAACAACATC AACAGCAACA ACAGTAACCA CAGCCACCAC AGTAACAACA
TCAACGGCTA CAACATCCAC CGTAGCTGTG GTAACCACCA CTACTACCGC CCCATACACG
GTTAAGTTAA CTGCACCTAA TCCAAGTGAG TTAATTGATG TATCCCAGGT AGCTGCACCG
GATTGTCTTG ACCCGGCAAC TGGATTCTAT GTTCAGGATG GGCCAATATT CGCTGTGGTG
TTTCAGGGGT TGGTTGGGTT TAATGGTAGT AATTATATGC AGATTGTCCC AGTCATTGCT
AAGAATTGGA GCACACCTGA TGATCAACAC TGGTACTTCA CCATTAGACA CCACGTGTGG
TTTAGTAACG GTGACCCAGT TAACGCCACT ACTGTCTGGT TCAGCATATA TAGGACTATA
CTCATGGGTC AGGGCCCAGG AATAAGTAAT TACGGTAACA TACTCTATAA TATTACTAAG
GCTACTTTAA CCGGTTACTT CATACCATGG GGTGCATGCC ATGCCTTAGC CTACGCAACG
GGTAATAACG CCTACCTAAG TAATGCAACC CTATGCGCCT ACGCCTTGGC TAATGTTTTA
AGCAACTTCA ATGTTGCTAA TGCGACGATA CAGAAGATAA TGAGTTACCC CAATCAGGCA
ATAGTCGTGT TGAATCCCTT TGAAGTTGAG ATAACAACAT TGAAGCCTTA CCCACTATTC
CTATCTGATA TTGCGGCCTG GTGGGGTTTC GTAGTTGACC CAGTCTTCAT TGATTCACAC
GGTGGTGTTC AACCCAATAC GCCTAACTCA GAGCTATGCA CTACACCAAT GCCTGGCACT
GGACCATATA TCATTAAGAG TTACACACCT GGTGAGGAGC TCCTACTAGT TAATAATACT
GATTACTGGG TTTACTACTA CTATAACCAT GGTATGGCAA GTGAGATTCC GTGGATTATT
CAACCAGCCC ACATTACCTA CATTGATGTT AAATACGGCC TAGACACCAC TGATAGGATT
GAGGACTTCG TTAAGAATAT TGCGCAAATA ACAACAGTAT CAACAATAAC TATGCCTGAA
TTGGTTAAAT TATACTCATC AGCCACAGGT ATACCGAGCG GTAACTGGAG CCTATACATT
CACAACTTCG GGCCAAGTGG CTGTGTCTTC TACTTAAGCT TCAATAACTA CGTCTGGCCT
ACTAACGACA CTGACTTTAG GTTAGCTATA GTTCACGCCT TAAATGCAAC AGCATTGCTT
CAACCATACT ATGCATTAGG CATGTACTGG GCCACAACCT ATGTTGGACC TATCGCACCC
AACTTCAAGC CATACTACAA CCCAGATAAC TTACCTGTTT ACCAGTATAA CCTAACCCTA
GCCTTACAGT ACCTTGTTAA GTTCCTTGAT AAGTACGGTT ACTACGTTGT CTTACCCAAT
GGTACAGCAA TAGGTGATAC TAGTGGTACT CAATTACCGA CAATTAACAT AGTTACCATT
GCGCCGTTAA CCACGTTCAC TAAGGAGCAG TTTGAGATTA TTCAAAGTGA ATTAGCACAA
ATAGGTGTAC CGGTTTCACT CCAGTTGGTT ACTGCGTCAG CCACTGATGA TTGGGTTACC
CCAAGTGGAA CACCGGCTAT AGTGGATTTA GGCTGGTGCC CAGATTGGCC TGACCCATTA
TTCCAGGAAA TGTGGCCACT GACCAATATA ATAAATGGTG GTATTAGCGG TAACTTAGCT
TGGTTCAACA ATAGTCTAGT CAATAATATT ACTAATGAAT TACCCTTCAT AACTAATTTA
ACTGAGCAGT TGAGGCTTGA TGCTGAGGTT TATAAGATAA CGTATAATGA GGCACCGTAC
TACTGGCTAC CAACTGGTTT AGAATACATG ATTGTTCAAC CATATGTGAA AGGCGTGATC
TACAACCCAT ACTTAAGCTA CTACTACAAC ACAATGTACT ATGTACCATT CACCGCCACA
TTCTATAAGA CAGTAACCAC AACCACTACA ACCACGTCAA GTTAA
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| Protein sequence | MNMNGISRSV LAAVVVVVVV VAVAGYVGYY YATHPKVVTT TVVSTSATTV TTTTAVTTTT
ATTVTTSTAT TVTTATTVTT STATTSTVAV VTTTTTAPYT VKLTAPNPSE LIDVSQVAAP
DCLDPATGFY VQDGPIFAVV FQGLVGFNGS NYMQIVPVIA KNWSTPDDQH WYFTIRHHVW
FSNGDPVNAT TVWFSIYRTI LMGQGPGISN YGNILYNITK ATLTGYFIPW GACHALAYAT
GNNAYLSNAT LCAYALANVL SNFNVANATI QKIMSYPNQA IVVLNPFEVE ITTLKPYPLF
LSDIAAWWGF VVDPVFIDSH GGVQPNTPNS ELCTTPMPGT GPYIIKSYTP GEELLLVNNT
DYWVYYYYNH GMASEIPWII QPAHITYIDV KYGLDTTDRI EDFVKNIAQI TTVSTITMPE
LVKLYSSATG IPSGNWSLYI HNFGPSGCVF YLSFNNYVWP TNDTDFRLAI VHALNATALL
QPYYALGMYW ATTYVGPIAP NFKPYYNPDN LPVYQYNLTL ALQYLVKFLD KYGYYVVLPN
GTAIGDTSGT QLPTINIVTI APLTTFTKEQ FEIIQSELAQ IGVPVSLQLV TASATDDWVT
PSGTPAIVDL GWCPDWPDPL FQEMWPLTNI INGGISGNLA WFNNSLVNNI TNELPFITNL
TEQLRLDAEV YKITYNEAPY YWLPTGLEYM IVQPYVKGVI YNPYLSYYYN TMYYVPFTAT
FYKTVTTTTT TTSS
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