| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1284 |
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| Symbol | |
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| ID | 5708470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | + |
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| Start bp | 1353577 |
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| End bp | 1354785 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641275790 |
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| Product | Pre-mRNA processing ribonucleoprotein, binding region |
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| Protein accession | YP_001541101 |
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| Protein GI | 159041849 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1498] Protein implicated in ribosomal biogenesis, Nop56p homolog |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000448185 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGGACG CCTTAGGCAT CATTGCGCTT AGGGATGATG GTTCAGTAGT GGATAAGCTA
GTGTATGATT ATGATGCTCA AAGAATCGCT AGTATGCTTA ACAGCATTGA GGTTGGTAAA
CCCACCGATG AGTTAATAAG CTTCATTAAT AAGTTAGCTA AGGCCGGGGT CTCCACAATT
TACGTGGAGC ATAAGGAATT AGCCAGAAAC CTAGCCAACG TAATTAAGGG TGTTGAGATT
AAGGCTGAGT TACCCACTAA GGTGGGGAGG CTATTTAGGG AGGAGTTTTG GGGCAGGTAC
CTTAAGGAGG TTTACGGTAT TGAACCCATT GAATACATTA AGAGGGTTCA TGAAGTCTCC
GTGATCCAAA CAAGGCTGAA GCTGAAGCAG GCAGCGGAGA GGAGGGACTT ATTCATAGCC
CAGGCAATAA ATTCAGTGGA TGACTTAGAT AAGGTATCCA ACCTCGTGGC CTCTAGGCTT
AGGGAATGGT ATGGAATACA CTTCCCTGAA TTAGAGAACT TAACGAGGAA CAATAATGAG
TACGCCGTGC TCGTTTATAA GCTTGGGGAT AGATCCAACT ACACTAAGAG TAATATAATG
GAGGCTTTAC CCGAACTAGG CGAGGAGAGG GCCAGTAGGA TTGCTGAGGC GGCTGCTAAG
AGTGTTGGGG CATCAATAGT TGAGTGGGAT CTCCAGCAGA TTAAGGCGCT GGCTAAGCTT
TACCTTGATA TGCAGACCAT TAGGGAGAAC TTAACTGAAT ACATTGATGA CGCAATGAAG
GATGTTGCAC CAAACATTAG GGAACTTGCA GGTTCACTAC TTGGCGCTAG GTTAATTGCC
TTAGCTGGAA GCTTAATGAA ACTAGCCCTA ATGCCAGCGT CAACAATTCA AGTCCTAGGC
GCCGAGAAGG CCCTCTTCAG GGCACTTAGG GGTAGGGGGA GGCCGCCTAA GCATGGTGTA
ATATTCCAGT ACCCAGACAT ATTCAGGGCA CCAAGGTGGC AGAGGGGTAA GATTGCTAGG
GCTCTTGCGG CTAAATTAGC CATAGCGGCT AAGGCTGATG CATTCACAGG CAACTTCATT
GCACCTAGGC TTAAGGAGGA GTTCATGAGG AGGGTTCAGG AGGTTAAGAC TATTTACGCC
AAGCCACCGC CCAGGAAACC GGCGGCTAAG CCGCATGGTA AGCCTGAGAG GAAGCCCAGT
AGAAGGTGA
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| Protein sequence | MLDALGIIAL RDDGSVVDKL VYDYDAQRIA SMLNSIEVGK PTDELISFIN KLAKAGVSTI
YVEHKELARN LANVIKGVEI KAELPTKVGR LFREEFWGRY LKEVYGIEPI EYIKRVHEVS
VIQTRLKLKQ AAERRDLFIA QAINSVDDLD KVSNLVASRL REWYGIHFPE LENLTRNNNE
YAVLVYKLGD RSNYTKSNIM EALPELGEER ASRIAEAAAK SVGASIVEWD LQQIKALAKL
YLDMQTIREN LTEYIDDAMK DVAPNIRELA GSLLGARLIA LAGSLMKLAL MPASTIQVLG
AEKALFRALR GRGRPPKHGV IFQYPDIFRA PRWQRGKIAR ALAAKLAIAA KADAFTGNFI
APRLKEEFMR RVQEVKTIYA KPPPRKPAAK PHGKPERKPS RR
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