| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1245 |
|---|
| Symbol | |
|---|
| ID | 5709397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 1314976 |
|---|
| End bp | 1315701 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641275750 |
|---|
| Product | cytidyltransferase-like protein |
|---|
| Protein accession | YP_001541062 |
|---|
| Protein GI | 159041810 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
|---|
| COG ID | [COG0615] Cytidylyltransferase
[COG1849] Uncharacterized protein conserved in archaea |
|---|
| TIGRFAM ID | [TIGR00125] cytidyltransferase-related domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0187562 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.00542026 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACCT TAGCTGATAG GGTATTGACT TATGTTAGAA ACGTTGAGCA GGCTATTGAG
GCATTACGCA CTAATGCTAA TGGTGGTGGG GAGGTTGGTG AATTAATTGA GTTGGCTGAG
GCTTATCTTA AGGATACTTT ACACTACTTC AAGGTGGGTG ACTATGAGAC GGCTCTGGCT
ACGATATCCT ACGCAGAGGG CTTGCTGGAT GCCTTAAGGA TCCTTAAGTT GAGTGAGGTT
AATTGGAGGA AGCCGAGTGA ATTAGCTAAG TTAGCGTCAA GGAAGGTTTT CGTGGCTGGC
ACATTCGATA TAATACACCC AGGCCACGTG GGGTACCTTA AGTACGCCTG GGGTTTAGGC
AGGGTTGTGG CTGTTGTCTC CACTGATGAG AGTGTTAAGA GGATTAAGGG TAGGGAGCCT
ATAATACCCG CTAAGCAGAG GGTTGAGGTG CTTGAGGCCA TAGAGTACGT TACTAAGGCT
AGGGTTGGTT ATGAGGATGA CATGTTTAGG GTTGTTGAGG AGGAGAAGCC TGATATAATA
CTCCTCGGGC CTAATCAACC CTTCACCGAG GAGGAGATTA GGAGAGCCTT AAGGAGTAGG
GGTATTAACG CTGAGGTGGT TAGGATGCCT AATATTATTA ACTGCCAGTT ATGCAGCACC
AGTAGCATAG TTAGGAGGAT TCTGGAGATG GCCGGGGAAT TAACCTCATC CCTCAGGAAT
CATTAA
|
|---|
| Protein sequence | MSTLADRVLT YVRNVEQAIE ALRTNANGGG EVGELIELAE AYLKDTLHYF KVGDYETALA
TISYAEGLLD ALRILKLSEV NWRKPSELAK LASRKVFVAG TFDIIHPGHV GYLKYAWGLG
RVVAVVSTDE SVKRIKGREP IIPAKQRVEV LEAIEYVTKA RVGYEDDMFR VVEEEKPDII
LLGPNQPFTE EEIRRALRSR GINAEVVRMP NIINCQLCST SSIVRRILEM AGELTSSLRN
H
|
|---|
| |