Gene Cmaq_1244 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCmaq_1244 
Symbol 
ID5709470 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCaldivirga maquilingensis IC-167 
KingdomArchaea 
Replicon accessionNC_009954 
Strand
Start bp1314211 
End bp1314897 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content46% 
IMG OID641275749 
Productdeoxyribonuclease V 
Protein accessionYP_001541061 
Protein GI159041809 
COG category[L] Replication, recombination and repair 
COG ID[COG1515] Deoxyinosine 3'endonuclease (endonuclease V) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0616034 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.00561497 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGTTAGGA GGATTATTAG TGAGAATTAC GTTAAGTCAA GGGTACCTAA GGGCTTTAAC 
CTTGAGGCTG CACGCATGGT TCAGAGGAGG CTGGCGTCAA TGGTTGTTAC CATGCCATTA
ACGCAGTCTG TAGACCTCAT TACCGGTATT GATGTAGCCT ACAGGGGTAA TTACGCCTAC
GCAGTGGCGG CAACCTACTC CATGAGGCTT AACCACATTA TTGAGTATGG GTGTTATGAG
GGTGAGGTCA CTTTCCCATA CGTACCAACC CTACTATCCT TTAGGGAACT CTCACCAATG
ATTAAAGCCT TCATGAGGCT TAAGGAAAGG CCCCATGTTG TGTTAATTGA TGGCCACGGT
GTAGCCCACC CTTATAGGCT TGGTATAGCT GCGCACTTCG GTGTGGTAAT GGGTTTACCG
ACTATTGGGG TTGCTAAATC ATTACTCTAC GGTGAGGTTA AGGAATCCCT CATAATTGAT
CCAAGTAATG GGGAAGTCAT AGGCGGTGTG GTTAAATGCG GGAGGCATGA GGTTTACGTT
AGCGTGGGTA ACATGATTAC GCTTGACAAT GCCTTAACAT TGGTTTCAAG ACTGTGCCTA
AGGGATAGGA TGCCTGAACC AATACTGCAT GCTCACACGA TGGCTAATAA GGTTAAACAC
AATGGCTGCG TTAATGCATT AGCCTGA
 
Protein sequence
MVRRIISENY VKSRVPKGFN LEAARMVQRR LASMVVTMPL TQSVDLITGI DVAYRGNYAY 
AVAATYSMRL NHIIEYGCYE GEVTFPYVPT LLSFRELSPM IKAFMRLKER PHVVLIDGHG
VAHPYRLGIA AHFGVVMGLP TIGVAKSLLY GEVKESLIID PSNGEVIGGV VKCGRHEVYV
SVGNMITLDN ALTLVSRLCL RDRMPEPILH AHTMANKVKH NGCVNALA