Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cmaq_1204 |
Symbol | |
ID | 5709800 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Caldivirga maquilingensis IC-167 |
Kingdom | Archaea |
Replicon accession | NC_009954 |
Strand | - |
Start bp | 1268692 |
End bp | 1270251 |
Gene Length | 1560 bp |
Protein Length | 519 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641275708 |
Product | type II secretion system protein E |
Protein accession | YP_001541021 |
Protein GI | 159041769 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.431618 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.000463314 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGTCTAGCA TTAGCTTAGG ATTTGAGAGA ATGATTGATG TTAAGGGTCA GTATAGGTTG ATTGAAAGGT ACCCTGTTAA TGAGCCTTAC GCCTACGTTA ACATAATGGA GAACACTGAG ACTGGTTCAA TAATGTACTA CGTTGATGAG GTCGCCTTAA CCACAAGTGA GAAGAGGGTT TACGGTAATT TACTAAGGAT AATAATGAGT GAATTACCCC CACCTGAACA GATAGGTGAC GTTAATTCAG TTAGGCAGTT TTTAGCTAAT AAGGTTAGGG AATTGATACG TAAGTACAGG AGGTATCTTA GACTATCCCC CAATGCTCAA TCAACCCTAG CCTACTACCT TGAACGTGAT CTACTGGGCT TTGGCCCAAT TGACCCCCTC ATGAGGGATG AGAATATTGA GGATATTTCA GCTGATGGGG TTGGGAAGCC GATATACGTT TACCATAAGG ATTACGAAAG CATACCAACA AACATAGTCC CCCTTAGTGA TGAGGCTATT GATGACTTAG TCGTTAAGTT GATACATATG GCTGATAGGC ATGTATCAGT CGCAACACCA ATAGTTGATG CCCAGCTTCC CGACGGCTCA AGGATTGCGG TAACCTATAG GCGTGAGGTC TCACCCAGTG GCTCAACTTT CACCATAAGG AAGTTTAGGT CAAACCCATT CACCTTCACT GAATTGGTCA CTAATGGTAT GATTAGCCCC GATATAGCTG GCTACTTCTG GACGATGATG GATTACCATA AGTCATTCAT GGTGATAGGA GTAACCGGTG CCGGTAAGAC AACGTTCCTG AACGCAATGG CAACCTTCAT TAGGCCTAAC ATGAAGATAA TAACTGTTGA GGAGGTACCC GAAGTTAAGT TACCTCACCA GAATTGGATT AGGCTAGTTC CAAGGCTCTC CTTCGGTCCC CAGAAGACCT CTGAAATAAC CATGTTTGAC TTGGTTAAGG CAACCTTAAG GATGAGGCCT GACTACCTAA TAGTGGGTGA GGTTAGGGGT GAGGAGGCCT ATGTGCTTTT CCAAGCAGTC TCAACAGGCC ACGGTGGCAT ATCAACAATG CACGCTGAGA ACTTTGATGC AGCCAAGAAT AGGTTGATGA GTCCGCCAAT GAATATACCC GCAGCCTACA TACCCTCAAT GAATATCTTC GTAATGATTA GGAGGATAAG GATGATTAAG GATGGTCGTG AAAGAGTCGT GAGGAGGGTT ATTGAGATAG GTGAACCCGT ACTGGATAAT GGGGATGTTA AGTTCATAAC AGTGTTCAAG TGGAATCCAG TACTGGATAG GCATGAATCA TACCTAGATA GAAGTGTTTT AGTCAGGGAT ATTGCGGAGG AGAGGGGTGT TAGGCCAAGT GATGTTATTG AGGATATTAA GACCAGGGCA TCCATAGTTA GGTGGATGGT TGATAACGGT ATTAAGGACT TCGATAAAGT GGCGAGAATG GTGGAGTTAT ACTATAATAG GCCTGAGCAA GTGTTATCAA TGGTTAGGGA GAAGGCAACT GCACAGCCCA TTGCCCCAGC TCAGCGTTAA
|
Protein sequence | MSSISLGFER MIDVKGQYRL IERYPVNEPY AYVNIMENTE TGSIMYYVDE VALTTSEKRV YGNLLRIIMS ELPPPEQIGD VNSVRQFLAN KVRELIRKYR RYLRLSPNAQ STLAYYLERD LLGFGPIDPL MRDENIEDIS ADGVGKPIYV YHKDYESIPT NIVPLSDEAI DDLVVKLIHM ADRHVSVATP IVDAQLPDGS RIAVTYRREV SPSGSTFTIR KFRSNPFTFT ELVTNGMISP DIAGYFWTMM DYHKSFMVIG VTGAGKTTFL NAMATFIRPN MKIITVEEVP EVKLPHQNWI RLVPRLSFGP QKTSEITMFD LVKATLRMRP DYLIVGEVRG EEAYVLFQAV STGHGGISTM HAENFDAAKN RLMSPPMNIP AAYIPSMNIF VMIRRIRMIK DGRERVVRRV IEIGEPVLDN GDVKFITVFK WNPVLDRHES YLDRSVLVRD IAEERGVRPS DVIEDIKTRA SIVRWMVDNG IKDFDKVARM VELYYNRPEQ VLSMVREKAT AQPIAPAQR
|
| |