| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1117 |
|---|
| Symbol | |
|---|
| ID | 5708640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 1173938 |
|---|
| End bp | 1174483 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641275617 |
|---|
| Product | 2'-5' RNA ligase |
|---|
| Protein accession | YP_001540935 |
|---|
| Protein GI | 159041683 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1514] 2'-5' RNA ligase |
|---|
| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAGGT TATTTGTGGC AGTGGACTTA TCCGATGAGG TGAGGGGTAA GGTAATTGCC
TTTAGGGATG CAGTATCCAG TAGTGGCGCT GATGTTAAGC CTGTTGAGGA TGAGAACCTT
CACATAACCC TACGCTTCCT AGGTGAGGTT CGGGATAACC TTCTTCCTGA AATTATGCGT
AACTTAAACT CACTAAGCTT CAGTAGCTTC AGGATGCATG TGAAGGGTAC TGGAGCATTC
CCATCAGCAT CATCCCCAAG GGTTATTTGG GTTGGTGTCG AGGAGGGTGG TGACCAGCTT
AAGGCTCTTC ATGATACTGT TGAGGAGTTA GTGGGTAGGT ATGGGGTTAG TGATGAGAGG
GAATTCACAC CCCACATAAC TGTGGCTAGG GTTAGGGGTA GGGGCAGTGT GTTGGGTAAG
TTAATTAACC AATGGAGGGA CTTCGACTTC GGGTGGCAGA CCGTGGATTC AGTAATACTT
AAGAAGAGTA CGTTAACCCC AAGGGGCCCA ATATACGAGA ACCTACTGAT CATTAAGCTT
AAGTAA
|
|---|
| Protein sequence | MVRLFVAVDL SDEVRGKVIA FRDAVSSSGA DVKPVEDENL HITLRFLGEV RDNLLPEIMR
NLNSLSFSSF RMHVKGTGAF PSASSPRVIW VGVEEGGDQL KALHDTVEEL VGRYGVSDER
EFTPHITVAR VRGRGSVLGK LINQWRDFDF GWQTVDSVIL KKSTLTPRGP IYENLLIIKL
K
|
|---|
| |