| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1103 |
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| Symbol | rps4p |
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| ID | 5709692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | - |
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| Start bp | 1162377 |
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| End bp | 1162922 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641275602 |
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| Product | 30S ribosomal protein S4P |
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| Protein accession | YP_001540921 |
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| Protein GI | 159041669 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01018] ribosomal protein S4(archaeal type)/S9(eukaryote cytosolic type) |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.798829 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGGGATC CTAAGAGGCC GAAGAAGAAG TATGTTGAGG GGAAGCCGAA GAGGCTATGG
AATAGTGACT TATTGATGAG TGAGCTTAGG CTTATTGGTG AGTATGGTTT GAGGAATAAG
AAGGAGCTTT GGTTAGCCAG AGCATTATTG AGGAGCATTA AGCATAGGGC TAGGGAGATA
CTTTCAGCAC CAATGGAGAT TAGGGGGGAG GCTGAGAAGA GGCTTAAGGA TAGGTTATTT
AGAATGGGGT TAATAAGCGA TATTAATATA CCATTGGATT CAGTACTAGC ACTGGATGTA
ACAGCAGTAC TTGAACGCAG GCTTCAAACA CTAGTGTATA GGAAGGGTAT GGCTAGGTCA
ATTCATGAGG CCAGGCAATT AATAGTGCAC GGTCACATAT CAATAAATGG TGTTAGAGTC
AGGTCGCCTG GTTACCTTGT CCCAAGGAAC CTTGAGGATG GCATAGGCTT CGCACCAACG
TCACGCATAG TTAAGGCTAA GGTAACTCAA CAGGTTAATC AGGGAGGGCA AGCGGTTAAT
CAATGA
|
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| Protein sequence | MGDPKRPKKK YVEGKPKRLW NSDLLMSELR LIGEYGLRNK KELWLARALL RSIKHRAREI
LSAPMEIRGE AEKRLKDRLF RMGLISDINI PLDSVLALDV TAVLERRLQT LVYRKGMARS
IHEARQLIVH GHISINGVRV RSPGYLVPRN LEDGIGFAPT SRIVKAKVTQ QVNQGGQAVN
Q
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