| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1057 |
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| Symbol | rpl30p |
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| ID | 5710095 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | - |
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| Start bp | 1106775 |
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| End bp | 1107332 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641275557 |
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| Product | 50S ribosomal protein L30P |
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| Protein accession | YP_001540876 |
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| Protein GI | 159041624 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1841] Ribosomal protein L30/L7E |
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| TIGRFAM ID | [TIGR01309] 50S ribosomal protein L30P, archaeal |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.022347 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0000000491432 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCAGAGTA CCCAGGGGAT TGAGCGGAGT GGGGAGCATG GGAGGGTTAT TGTTGCTGCA
GTTAGGATTA GGGGTTTAGT TGACGTTAGC CCTGAGGTTA ACCATACGTT AAACCTACTG
AGGCTTAGGA GGAGGTTCAC GTGCAGTGTA TACGTGTTGT CTGATTCAAT TAAGGGTATG
CTTAAGTCTG TTGAGAGTTG GGCTACGTGG GGTGAGTTAA GTAGGGATAC ATTAATTCAA
CTACTCAGGA GGAGGGGTAG GATTGTGGGT GACTTACCTT TAACGGATGA GTACCTTAAG
AAGTATGGGT GGGGTAGTGT TGAGGAGTTG GTGGATGCTT ACCTTAAGGG TGAGGTTAAG
AGCCTATGGT GCAGGAGGGG TGAGGGACCT AGGATGATTA ACGGTAAGGC CTCCTGCATA
CCGGGCCTTA AACCATTCTT CAGACTACAC CCACCTAAGG GTGGATTCAA GGGGAGTATT
AAGAAGCCCT ATGGGGCTGG TGGGGAGTTG GGTTACAGGG GTTTAGACAT TAATGATCTT
ATACTGAGGA TGATTTAA
|
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| Protein sequence | MQSTQGIERS GEHGRVIVAA VRIRGLVDVS PEVNHTLNLL RLRRRFTCSV YVLSDSIKGM
LKSVESWATW GELSRDTLIQ LLRRRGRIVG DLPLTDEYLK KYGWGSVEEL VDAYLKGEVK
SLWCRRGEGP RMINGKASCI PGLKPFFRLH PPKGGFKGSI KKPYGAGGEL GYRGLDINDL
ILRMI
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