| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1055 |
|---|
| Symbol | |
|---|
| ID | 5710313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 1104832 |
|---|
| End bp | 1106115 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641275555 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_001540874 |
|---|
| Protein GI | 159041622 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.123493 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0000000766356 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGGAGGA GTAAGTTAAC ACTATGGGAG GCCACAGCCG TGGGGTTAGG TAACATTATT
GGGGCAGGCA TATTCGTTAT GGCTGGTTCA GCAATAAACC TAGCTGGACC TGGGGCGTTA
CTCGCCTTCA TAGTGACTGC GGCCCTAGCC ATTGGGGTTG GGTTAAATAG TGCTGAAATG
GCCTCAGCCT TCCCCAACGT TGAGGGTGGG GTGTACTCCT TCGCTAAATT AACCCTAGGT
GACTCCGTGG GTTTCCTGGT TGGTTTACTT AGGGTTGTAT CCTACGTAAT CGGTGGGGCT
GCTGTTGCGT TAGGGTTCTC AGGTTACTTA ACCTCAATGG GGGTGCCGCG GTACTTAACT
TACCCAGTGT CAGTGGCGTT AATTGTGATT CTATCCCTAC TCTACAGGTC TGGTTTAAAG
ATTGCCTCAG AGTTTGAGAA GTACTTAACG TCAATCAACG TGGCTGGCTT AGTAATATTC
ATTGCCGCTG GTTTACTTTA CTCGGGTCCA TTTAAGTCAA GTCACTTTAA GCCACTGCTA
CCTCATGGTT TATTCGGCCT CATTGAATCA TCGTCACTGG CCTTCTTCGC CTACTCAGGC
TTCAACACAA TAGCCACATT AACACCATCC GTGGAGAATG GGGAGAGGAA CGTGCCTAAG
GCAATAATAC TATCCTTAAG CATAACCACG GTAATATACA TCCTAGTGGT CTTCACAATG
CTCTACATAG CCCCCTGGCA ACTATACGGT ACCAGGCCTG ATCCATTAAG CTTCGCCCTT
GAGGAGGCTA GGGCCCCCTA TGTGGTTAGG TTAATTGTCT CATCAGTAGC CTTGTTATCA
ACCTTCACAG TGACGTTATC AATGATTATA GCTGGGGTAA GGACCTTGAG CCAGATGGCT
GAGGATAATG TAGCACCGAG GAGGCTTGCC CACGGTGACT GGCCACTGGT AATAGTGACT
ACGGCAACCT TAGCATCATT GGCGCTTGGT AACGTGGAGA CCCTTGGCCT AGTGGCTAAT
TTCGGCGTCG TGTTCTCCTA CATAACAACA CCAATAGCCG TAGTGGTGGC TAGGAGGAGG
GGTATTACTG GGTCCTTTAA GGCCCCCTTA TTCCCAATAC TGCAGTTACT AACCATTATC
CTATCCCTAC TAATCACCAG TGCCCTTGGT TATAATTCCC TTGAAATAGG GGCTATGACA
TTAATAGTAG GTATACTGAT TTATGAGGTT CACGAGGAGT TTAACATTAT TGGGAGGAGA
CGTAAAGTTA CTGCGGATGG TTGA
|
|---|
| Protein sequence | MRRSKLTLWE ATAVGLGNII GAGIFVMAGS AINLAGPGAL LAFIVTAALA IGVGLNSAEM
ASAFPNVEGG VYSFAKLTLG DSVGFLVGLL RVVSYVIGGA AVALGFSGYL TSMGVPRYLT
YPVSVALIVI LSLLYRSGLK IASEFEKYLT SINVAGLVIF IAAGLLYSGP FKSSHFKPLL
PHGLFGLIES SSLAFFAYSG FNTIATLTPS VENGERNVPK AIILSLSITT VIYILVVFTM
LYIAPWQLYG TRPDPLSFAL EEARAPYVVR LIVSSVALLS TFTVTLSMII AGVRTLSQMA
EDNVAPRRLA HGDWPLVIVT TATLASLALG NVETLGLVAN FGVVFSYITT PIAVVVARRR
GITGSFKAPL FPILQLLTII LSLLITSALG YNSLEIGAMT LIVGILIYEV HEEFNIIGRR
RKVTADG
|
|---|
| |