| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1050 |
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| Symbol | |
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| ID | 5710090 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | - |
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| Start bp | 1100622 |
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| End bp | 1101146 |
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| Gene Length | 525 bp |
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| Protein Length | 174 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641275550 |
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| Product | PUA domain-containing protein |
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| Protein accession | YP_001540869 |
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| Protein GI | 159041617 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2016] Predicted RNA-binding protein (contains PUA domain) |
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| TIGRFAM ID | [TIGR00451] uncharacterized domain 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.0861537 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00000000242397 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGGTTATTA ATAGGCATAT GCTCAGTAAG AAGGATATTA AGAGGCTTAT GAATGAGGTT
CCATGGTTAA GTGAAGTTTA CGGGAACATT GAGGAAGCCG AGGTTATTAA GGCTAATGAT
AACTTGGAAA TCTACAGAAT AATGAATGAC ACCGCATTAG TTAAGGCTGT GGTAAGCGTA
AGTAACACAA GCATGAACCT AACCTACCCA ACACTACTTG CCGCTAATAA GTACCCATCA
CTGGTGAAGT ACTACCCAGT GGTTCAGGTT GATGAGGGTG CTGTTAAGCC AATAGCCACT
GGGGCTGATG TAATGAGGCC TGGTATAAGG GAATTAACCG GTTCATTTAA ACCAGGGGAA
ATTGTACTGG TTAAGAGCCC TGGGGGGAGG GTAATAGCTG TGACTGTTAG CCTATACAGT
AGTGATGAGG TGATTAACAT GAGTAGGGGG AAGGTTCTTA AGAATATTCA CCACGTTGAT
GATTACGTCT GGAGATTAAT GAGTGAAGTG CATGAGCATA AGTAA
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| Protein sequence | MVINRHMLSK KDIKRLMNEV PWLSEVYGNI EEAEVIKAND NLEIYRIMND TALVKAVVSV
SNTSMNLTYP TLLAANKYPS LVKYYPVVQV DEGAVKPIAT GADVMRPGIR ELTGSFKPGE
IVLVKSPGGR VIAVTVSLYS SDEVINMSRG KVLKNIHHVD DYVWRLMSEV HEHK
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