| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1025 |
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| Symbol | |
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| ID | 5710380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | + |
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| Start bp | 1074329 |
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| End bp | 1076386 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641275526 |
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| Product | raffinose synthase |
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| Protein accession | YP_001540846 |
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| Protein GI | 159041594 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3345] Alpha-galactosidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0334443 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGTAA GTAACTTAAT TACCAGCATA GTAATAAGTT TTGACGATGG TTCAACCTGC
AATGTTGATT CACCCTCAGC CTCCTTCAAC CTCTGTGGTT TTGGTTCAGG TGAATTAAGG
GTTACTAGTG ATGAATCAGC ATTACTAATA GGCTTAACCC TTAAGGCAAG TAAACAATTA
AGCAAGTACC CAGTATCACT GGTGCTTAAT CAACCTAAGC CAAGTAGGGT GCTTGCCTTA
ACCTTCCTAG GCCTAGCAGG CCCATTCATC GGTAAGGCCT TCGGTTACTA TAACTACGTT
GCCCAGGGTA AGCAGCCTAG GTCCGAGCCA CCGCCTGATA AACCAGAGTA CCCACCGGGG
GTTAAGGCAA GTGGTTTAGT TGAGTCTGAT CCATTGGACT GCTGGTCCTA CCCAATGCTT
GTTAATAATT ATGGTGAACT ACACCCATAC ACCGTAATGG TGCTTATTGA TTCAGGTAAT
GGATCATACA CAGCATTATT CACCTTCTCC AACAATCAAT TAACCGCATG GCTTGATAAG
GGCCTAGTGA TAAGAACCTA CACCAGTAAG CCCAGTGACG AGGTTAAGTT AAGTTACGTA
GCCTCCATAG CCACAGGCAG TGACCCATAC GATGCAGTGG CTAAGGCTGT TTCCTCAGCC
TCCAGGGTTA CTGTGTTTAA GACGAGGAGT CGTAAGGCTA AGCCCCTATT CATGAATGGG
TTAGGGTGGT GTAGTTGGAA TGCATTACTC AGTGATGATT TAAGCCATGA TAATGTGGTT
AAGATAGTTA AGGGGCTTAG GGATAGGGGA GTACCCATTA GCTGGGTTAT TATTGATGAT
GGTTGGCAGG ACCTTTGGAA TGGTGTAATT AATAGCATTG AGCCAAGTAA GGTGAAGTTC
CCAAGGGGCT TTAAAGCCGT GGTGGATGAG TTAAGGAACC TGGGTGTTAG TAATATTGGA
TTATGGTTCA CCATAAACCT ATACTGGAAC GGCGCCTCTG AAGCCTTCAT TAAGGCTCTT
AACGCTGAGG GCTTTAAGAC AAGTAGAGGC TACGTACCTA AGCCTAACCT TGAGGACTCC
TTCAAGCTCT ATGATGCCTG GTTCAGGGTG CTTAAGAGTA ATGGCTTCAG TTTCGTTAAG
GTTGATAACC AGTGGTCAAT ACACCACTTA TACAGGGGGT TTGCAAATGA TGCCGAGGCC
GCTGCGGCCG TTGAATTAGG CCTTCAATTA GCAGCCACCA CTAATGGTTT AGATGTATTA
AACTGCATGA GCATGCTCCC CGGTAACTAC AGTAACTACG CCATTAGTAA TGCCTTAAGG
GTTTCAATAG ACTACATCCC AATGTGGAGG ACTGACGCTA AGCTTCACAC AATGTGGAGT
GCCTACAATA GCCTACTCTA CAGTAACTTC GGTTACCCCG ACTACGACAT GTGGATTAGC
TACGACCCAT CAGCAAGGCT AATAGCCGTC AGCCGCATAT TCAGCGGTGG CCCAGTATAC
ATTACTGACC GTGAACCTGA GAAAACCAAT GTTGAGTTAA TTAAATGGAT TACACTCAGT
AATGGCGAGG TCATTAGGGT TGATGAACCA GCATTACCAA CTAGGGATAT CTTATTCAGA
GACCCCTACA ATGAGACTGT ACTACTTAAA CTAGCCTCAA CAGTCAATGG TTACCCAGCC
ATCGCCTTCA TGAATGTTAA TAAGAATGGT GTAAGGATTA GTGAGGAGTT TAAACTAGTT
AATATGCCCA TGAAGTTAAA TGGCCAATAC GCATACTACA AGGTGATTAG TGGGGATTGG
GGCATCGTTA AGCCTGATGA TTCAATTAAG GTTGAGTTAA GTGAATTAGA GGCTGAGGTA
GTAGTGCTGG CGCCATTAAT CAACGGTAAG GCTGCATTAG GCATAGTGGA GAAGGCGCTG
CCACCATACG CAATTAAGGC AACCCCAATT AACGGTGAAT TAATGGTGGA GGCTAGGGAG
GATGGAACAA TGGCTTACGT GAAGGAGGGG AGGATGGAGA GAATTAGGGT GAAGGCAGGG
GAGAGGGTAA GAATATGA
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| Protein sequence | MSVSNLITSI VISFDDGSTC NVDSPSASFN LCGFGSGELR VTSDESALLI GLTLKASKQL
SKYPVSLVLN QPKPSRVLAL TFLGLAGPFI GKAFGYYNYV AQGKQPRSEP PPDKPEYPPG
VKASGLVESD PLDCWSYPML VNNYGELHPY TVMVLIDSGN GSYTALFTFS NNQLTAWLDK
GLVIRTYTSK PSDEVKLSYV ASIATGSDPY DAVAKAVSSA SRVTVFKTRS RKAKPLFMNG
LGWCSWNALL SDDLSHDNVV KIVKGLRDRG VPISWVIIDD GWQDLWNGVI NSIEPSKVKF
PRGFKAVVDE LRNLGVSNIG LWFTINLYWN GASEAFIKAL NAEGFKTSRG YVPKPNLEDS
FKLYDAWFRV LKSNGFSFVK VDNQWSIHHL YRGFANDAEA AAAVELGLQL AATTNGLDVL
NCMSMLPGNY SNYAISNALR VSIDYIPMWR TDAKLHTMWS AYNSLLYSNF GYPDYDMWIS
YDPSARLIAV SRIFSGGPVY ITDREPEKTN VELIKWITLS NGEVIRVDEP ALPTRDILFR
DPYNETVLLK LASTVNGYPA IAFMNVNKNG VRISEEFKLV NMPMKLNGQY AYYKVISGDW
GIVKPDDSIK VELSELEAEV VVLAPLINGK AALGIVEKAL PPYAIKATPI NGELMVEARE
DGTMAYVKEG RMERIRVKAG ERVRI
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