| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1002 |
|---|
| Symbol | |
|---|
| ID | 5710454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 1054707 |
|---|
| End bp | 1055984 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641275503 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001540823 |
|---|
| Protein GI | 159041571 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4833] Predicted glycosyl hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.508727 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAGGTA AGCTAACCTT ACTCACGTTA CTTGCACTGG CGTTAATAGT GCTGAGCTTA
CTTAACCTGT ATAATGCATC ATCAATAAGC TTAATTGAGC TTTACTCCAA GAGGGCTGTA
GCCACCTTTA ATGCCCTCCA AGACCACTAC TACGTGAATT CCCTAAATCT ATATAAAGGC
TCCACCTGTG GGGATTATAG TTGCCTTTGG ACTTACTCAC AGATTTTATC AGCATTAGTT
TACTTATCCC TAACACCTGG TTTAGGTAAC TTCACGAATC TATTTAATCA ATACTACTTA
GGTTTAAGTC ATTACTCTAA TCCACTTAAC CCATCATCAG GGTATGAGTC CGCTGTAACA
CCACCCATTG GTCCAGGTGG TGACACTTAT TATGATGATA ATGAGTGGGT TACGTTAGCA
TTAATAAAAA TGTACCTGGC GACCAATAAT ACTAGGTACT TGAGGAGGGC TGAGGAGTTA
TTCAACTTCA TAATCAGTGG GTGGAGTACC AATGAGTCAT TAAGGTGCCC TGGTGGAATA
TACTGGAGGG TTGGTGACTT ATCAAGGAAC ACTGTATCCA ATTCCCCAGC CGCTGAGGCT
GCTGCTGAAT TATACCTAAT AACCGGTAAC CCAAGTTACT TGAAGTGGGC TATTAGGATC
CTTAACTGGG TTAATCAATG CTTAAGGTCA CCTAGTGGAC TATATTATGA TCACATTAAC
CCAGATGGTA CCATTGATGA AACAATATGG AGCTATAACC AAGGCACCAC AGCCGCAGCG
GCGGCATTAA TATATGAAGC AACCCATAAT GAGTCATACC TGGTTCTAGC TGAAGACTCC
GCATACGCAT CCTTAAGCTA CTTTAGCCAG GGAGCCATAT ACTCGCAGCC GCCTGAATTC
AATGCAATAT ACTTCAGAAG CCTTGAAAAG GTCATTGAGA TAAGCCGTAA TAACACGCTC
TCTAAAATGT ACTGGAACCT ACTCTTAACG TATGTTAATG ATACGTGGAT AACCTATAGG
GATCCTGAAA CTGGATTAAT AACAATGGGT CAACCATTGA ATTCAGTGAA TCCTGATGAT
GCGGAAATAT GGACTGCTGC AATGGTGCAG TTATACGCTA TAATAGCTGG TTCACGGCAA
CCAATTGCAT TTAAGGCACC TAGCATTAAA CCAGGCACTG GACTTGTGCA GGTGCAATGG
CCTATAATCA TTATAATCGT TATCGTATTA ATAATTGTAA TCACATATAT TGCCTTGAGA
ATCAGAGAGA AGAGTTAA
|
|---|
| Protein sequence | MVGKLTLLTL LALALIVLSL LNLYNASSIS LIELYSKRAV ATFNALQDHY YVNSLNLYKG
STCGDYSCLW TYSQILSALV YLSLTPGLGN FTNLFNQYYL GLSHYSNPLN PSSGYESAVT
PPIGPGGDTY YDDNEWVTLA LIKMYLATNN TRYLRRAEEL FNFIISGWST NESLRCPGGI
YWRVGDLSRN TVSNSPAAEA AAELYLITGN PSYLKWAIRI LNWVNQCLRS PSGLYYDHIN
PDGTIDETIW SYNQGTTAAA AALIYEATHN ESYLVLAEDS AYASLSYFSQ GAIYSQPPEF
NAIYFRSLEK VIEISRNNTL SKMYWNLLLT YVNDTWITYR DPETGLITMG QPLNSVNPDD
AEIWTAAMVQ LYAIIAGSRQ PIAFKAPSIK PGTGLVQVQW PIIIIIVIVL IIVITYIALR
IREKS
|
|---|
| |