Gene Cmaq_0998 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCmaq_0998 
Symbol 
ID5710211 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCaldivirga maquilingensis IC-167 
KingdomArchaea 
Replicon accessionNC_009954 
Strand
Start bp1050984 
End bp1052351 
Gene Length1368 bp 
Protein Length455 aa 
Translation table11 
GC content44% 
IMG OID641275499 
ProducttRNA CCA-pyrophosphorylase 
Protein accessionYP_001540819 
Protein GI159041567 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1746] tRNA nucleotidyltransferase (CCA-adding enzyme) 
TIGRFAM ID[TIGR03671] CCA-adding enzyme 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.465929 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.410879 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCTAATG TTGAGGATAT TGTTAAGGAG GCCCTTAGGA TCGTTACCCC CAGTCAGAGT 
GAGGTTAAGG TAATTAACGA TACTGCCTCA GAGGTAATGC ATATACTTGA GGGGATGCTG
CATAAATTAG GCCTTGAGGC TGAGGTTACT TTACAGGGTT CTATTGCCCA CGGTACTTGG
CTACCTGGGG ATAGGGATAT TGATGTTTTC TTAATTTTCC CACACAATGA GAAGTACATT
AACCTTGTTA AGTCAGGGGA ATTGGTGAGG AGCCTAGCCG CGGCGATTTC AGAAATGGGT
ATAAGCTGGG TCATGAATTA CGCTCAACAC CCCTACTTAA CGTTAACCTA CAATGGCTTT
AACATTGACG TAGTTCCATG CATTAGGATT AGGCCTGGTG AAAAACCAGT AACAGCCGCT
GATAGAACCC CCCTCCACAC ACTTTACTTA AGGGGTAGGT TAAGTGGCCT TGAGGATGAT
GTTAGGTTAC TTAAGTTAAT GATGAAGAGG ATTAACGTCT ATGGCGCCGA GGTTAAGGTT
CAAGGCTTCA GCGGTTACTT GACTGAATTA ATCACGTTAG CCTACGGGGG CTTCATAAAT
ACTCTTAAGG CAGCCTCAAG GTGGATCCCA TTCAAGGTTA AGATAATTCT TGAACCATCA
AAGCAAGTTA ACTTTAATGC ACCATTAGTT GTCATTGATC CAGTTGACCC AGGTAGGAAT
GCTGCTGCAG CCGTCTCCCT AGACTCAATG GCGATCTTCA TAGCAGCATC CAGGCGTTTC
CTTAAGAAAC CAAGCATGGT TTTCTTCACC AACAGTGCTC AATCACCCTC AGAATCATTA
ACACTAACCA CACCAACATT AATCCTGTAT GGTGAGTACC CTAAGGGTTA CGTGGAGGAT
ATTATTTGGG GTCAATTAAG GAGGATTGCA TCAACAATAT GGAGTACTGT GAGTAGCAGT
GGCTTTAAAC CAATTGACAT AGGCCTCTAT ACGCCGCAGG ACAATTACAT TGTAGTAATG
CTTACTGTTG AGGAACCTGA GTTACCTGAG TATGAAATAC ACATGGGTCC CCCTGTTTGG
ACTGATGAGG CTGAGGCATT CATTGAGAAG TACCTTAACG CCAGTAATGT GGTTGGCCCA
TTCATAAGGA ATGGAAGGTG GTTTGTGATT AGGCCTAGAA GGATTAAGAG TATTAAGGAA
GCCGTGGCCA AGAGTCTTAA GACTGTTAGA GGCAGTGTTG TTAAGGATTC CCTACTTAAG
GGTCGTGTAG TTTTACTACG TGATGCTAGT CAAGTTAATG AGCTACCAGT GGAGTTAAGG
GGCATTGCGT TAACCTTCAT GGGTAAGAGG CCTCACTGGC TTACCTAA
 
Protein sequence
MPNVEDIVKE ALRIVTPSQS EVKVINDTAS EVMHILEGML HKLGLEAEVT LQGSIAHGTW 
LPGDRDIDVF LIFPHNEKYI NLVKSGELVR SLAAAISEMG ISWVMNYAQH PYLTLTYNGF
NIDVVPCIRI RPGEKPVTAA DRTPLHTLYL RGRLSGLEDD VRLLKLMMKR INVYGAEVKV
QGFSGYLTEL ITLAYGGFIN TLKAASRWIP FKVKIILEPS KQVNFNAPLV VIDPVDPGRN
AAAAVSLDSM AIFIAASRRF LKKPSMVFFT NSAQSPSESL TLTTPTLILY GEYPKGYVED
IIWGQLRRIA STIWSTVSSS GFKPIDIGLY TPQDNYIVVM LTVEEPELPE YEIHMGPPVW
TDEAEAFIEK YLNASNVVGP FIRNGRWFVI RPRRIKSIKE AVAKSLKTVR GSVVKDSLLK
GRVVLLRDAS QVNELPVELR GIALTFMGKR PHWLT