| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0919 |
|---|
| Symbol | |
|---|
| ID | 5710306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 964295 |
|---|
| End bp | 965341 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641275421 |
|---|
| Product | replication factor C |
|---|
| Protein accession | YP_001540742 |
|---|
| Protein GI | 159041490 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAGC TTAAGGAATT ACTTTGGGTG GAGCGTTTTA GGCCTGTTAG GCTTGTGGAT
TTGGTTGATC AGGAGGGTGT TAAGGTTGGT TTGATGGAGT TTGTTAGGCG TGGTGACTTG
CCTCACCTAC TCTTCTATGG TCCTCCAGGT GTTGGTAAGA CTACTGCTGC CTTGGCTTTG
GCTAGGGAGC TTTACGGTGA TTCATGGCGT AGTAGTGTTC TTGAGCTTAA TGCCAGTGAT
GAGAGGGGTA TTGATGTTAT TAGGGAGAAG GTTAAGGAAT TCGCTAGAAC AATACCCACC
GGCCCAGTAC CGTTTAAACT AGTAATCCTT GATGAGGCTG ATAACATGAC TAGTGATGCC
CAGCAAGCCT TGAGGAGGAT TATGGAGATG TACGCATCAA CAACAAGATT CATACTACTA
GCCAACTACA TAAGCGGAAT AATAGAACCA ATACAATCCA GGTGCGCAAT ATTCAGATTC
AACCCACTAC CAAAGGAGGC AGTAATAGAG AGGCTTAGGC AAATAGCCAA GGAAACTGGA
GTAGAGGTAA CTGAGGATGG GTTAGAGGCA ATATGGGAGG TGAGCCAAGG AGACATGAGA
AAAGCAATAA ACACACTACA AACAACAACC ACAACAAACA AAAAAGTGGA TAGGGAGGCT
GTGTATAGGG TTGTTGGTAG GGTTGAGTTT AAGGTTGTTG ATGAGTTCAT TGAGAGCGCC
TTAAGTGGTA GGTTTGAGGA CTCCCGTAAG TTGCTTAGGA ACATAATGTA CACGTACGGT
GTGTCCGGTG TTGAGTTGCT TAAGTATATT GAGGATGAAC TACTCATTAA TGATAAGTTT
AAGCTACCTG TTGATGCGAA GGTTGAGGTC AGTGAGCTTG TGGCTGATAT TGATAATAGG
CTTGTAACAG GTAGTGATGA GGAGATTCAA TTAACAGCAT TAATAGCTAA ACTAGCCCTC
ATAGGCTCTA AGTATGGTTT AAGGACCGTG AAGGAGCCTG AATCCAAGCC AAGTGAGAAG
CCTGTTAAGA GAGGGTTACG TAAATGA
|
|---|
| Protein sequence | MSELKELLWV ERFRPVRLVD LVDQEGVKVG LMEFVRRGDL PHLLFYGPPG VGKTTAALAL
ARELYGDSWR SSVLELNASD ERGIDVIREK VKEFARTIPT GPVPFKLVIL DEADNMTSDA
QQALRRIMEM YASTTRFILL ANYISGIIEP IQSRCAIFRF NPLPKEAVIE RLRQIAKETG
VEVTEDGLEA IWEVSQGDMR KAINTLQTTT TTNKKVDREA VYRVVGRVEF KVVDEFIESA
LSGRFEDSRK LLRNIMYTYG VSGVELLKYI EDELLINDKF KLPVDAKVEV SELVADIDNR
LVTGSDEEIQ LTALIAKLAL IGSKYGLRTV KEPESKPSEK PVKRGLRK
|
|---|
| |