| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0838 |
|---|
| Symbol | |
|---|
| ID | 5709763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 882432 |
|---|
| End bp | 883196 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 641275341 |
|---|
| Product | LmbE family protein |
|---|
| Protein accession | YP_001540663 |
|---|
| Protein GI | 159041411 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2120] Uncharacterized proteins, LmbE homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTAA GTAAGCTAAG TAAGTATGTT GAATCTATTA CTATTGATGA AAAGAAGGTT
GATTTACTTA AAAGAGCCGG TAGAGTAATT GCGGTATCAC CTCACCCTGA TGATATTGAG
ATAGTAGCTG GTGGTTACTT AGCATTATTA GCATTAAGGA ATGCATCCAT AAAAGTAATC
GTGGTTAGTG ATGATAGGAT GAGTATACCA TTGAATGAGT TAACTGATTA TGACGTGATT
AAGATTAGAA TGGAGGAGGA GATTAATGCC ATGAGAGCCT TAGGTATTAG CAACGTGGAT
TATTTGAATT ACATAGACTC AGAGGTTCCT GAACCAAGCA TATTAAGGAG AGATTTAATA
AGAGTGTTCA GATCCTATGG GCCGGATTTA GTCATTACAG TTGACCCATA CCTCCCCTAT
GAAGCCCACC CAGACCATGT GAATACTGGA ATGGCCGTAT TACAGGCTGT ATTATTTCAC
GAGGTAAGTA GGGTTATGAA GGAGTATTCA CCAAAAACAC CTCCACCAGC AGTGGCATTA
GGTGCTTCAC ATAGGCCTAA TGCCTTAATA TGCATTGATG ATTATGTTGA TAGGAAAATG
AATGCATTGA GGGCGCATAA GTCGCAGTTC AATGAGGAGT TGCTTAGGGG CATTGAATTA
ATTCACATGA AGCTGGGTGG TGCGGCTGGA TGTAAGTATG CTGAGGCGTT TAAAGTTTTG
ACACCGGGTG AGTTGCATAT GAATCCTTTA GCCGAATACT CTTGA
|
|---|
| Protein sequence | MDLSKLSKYV ESITIDEKKV DLLKRAGRVI AVSPHPDDIE IVAGGYLALL ALRNASIKVI
VVSDDRMSIP LNELTDYDVI KIRMEEEINA MRALGISNVD YLNYIDSEVP EPSILRRDLI
RVFRSYGPDL VITVDPYLPY EAHPDHVNTG MAVLQAVLFH EVSRVMKEYS PKTPPPAVAL
GASHRPNALI CIDDYVDRKM NALRAHKSQF NEELLRGIEL IHMKLGGAAG CKYAEAFKVL
TPGELHMNPL AEYS
|
|---|
| |