| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0805 |
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| Symbol | |
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| ID | 5708718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | - |
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| Start bp | 840614 |
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| End bp | 841423 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641275308 |
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| Product | shikimate dehydrogenase substrate binding subunit |
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| Protein accession | YP_001540630 |
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| Protein GI | 159041378 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.108748 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.164141 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATGTAT TTGGCTTAAT AGGTTATCCA CTGAACTATA CCCTATCACC TCAGATTCAT
AACTACGTCT TCAAGAGACT AAGAATTGAT GCAGCGTATG TACCATTAAG GGTAGCGTCG
AAGAGATTAC TACACTTCAT TGAGTTCTCA AGGGATGCCT TAAGCGGATT CAACGTAACT
ATACCGCATA AGGTTGCAGT GGCTAAACTA ATTGATGAAC TTAATGATGA TGCAGACACT
ATTAAGAGCG TGAACACTGT TGTTAACAGT AACCAGAAAT TAATAGGCTA TAATACCGAC
TATGTGGCTG TTGAGGAATC TTTAATTGAA AGAGGATATA AGGGTGAGGA AGCATTACTA
ATTGGTGCTG GGGGAGCTGC TAGGGCTGTG GTTCTGGCTT TATCGAAAAC TGGGTGCAGG
GCAATTAAAG TACTTAATAG AAGTAGGGAG AGGGCAGTGG AGTTATGTGG ATTAGCCAAT
GGATTAGGCT TAGACTGCAG TGTGGTGGAT ATTGGTGGGA ATTATGGTAA ACCCCACGTT
ATTATTAACG CCACCCCACT GAGCAGTGAG GAGTATTGGT TACTTAACCT AGGTGAGCTG
GGGACTATGC TGCTCCTTGA CATGGCTTAT AAACCCAATA CTGAAACAGA CTTAATCAAG
AGGGCTAGGG AGCTAGGTAT TCAAGTTATT GATGGTGTTG AAATACTGGT TAGGCAAGCC
CTGGCTGCTG ATAAACTATG GCTAGGTGAC TTTAATGAAC CAAGTGCTAG TGAAGTAATT
AAGTATATTA AGGGTATTAA TCCCTCCTGA
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| Protein sequence | MHVFGLIGYP LNYTLSPQIH NYVFKRLRID AAYVPLRVAS KRLLHFIEFS RDALSGFNVT
IPHKVAVAKL IDELNDDADT IKSVNTVVNS NQKLIGYNTD YVAVEESLIE RGYKGEEALL
IGAGGAARAV VLALSKTGCR AIKVLNRSRE RAVELCGLAN GLGLDCSVVD IGGNYGKPHV
IINATPLSSE EYWLLNLGEL GTMLLLDMAY KPNTETDLIK RARELGIQVI DGVEILVRQA
LAADKLWLGD FNEPSASEVI KYIKGINPS
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