| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0788 |
|---|
| Symbol | |
|---|
| ID | 5709940 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 823180 |
|---|
| End bp | 824133 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641275291 |
|---|
| Product | putative mRNA 3-end processing factor |
|---|
| Protein accession | YP_001540613 |
|---|
| Protein GI | 159041361 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAGCG TCATTAGGAG GTTTGGTGGA ATTGAAGTCT CATGCTGCGG CCATAGTATA
CTCGTAGATC CTACACGTAG ATTCATAGAT AACTATGATG CGGTACTGAT AACTCACGGT
CATAGTGACC ATTATACAAG CCACATATCT AAGGCTAGAA GGATAATAAT GAGCGGTGAA
ACCTTAAAGA TACTCAGGGA GTTCAGGGGG TTAAGGCTTG GAGCCGGTGT AACTGTTGCG
TATCCTAATA GGCCAATAGT CTTTGACGAC TTCAGTGTGG TTCCATTAAA TGCAGGTCAC
GTAATGGGTA GCTTAATGTA CTTAATTGAA TTCAAGTTTG GTTCAGTATT ACTAACCGGT
GACATGAATA TTGAAGACAG CATCATACTC AAGGGGGCTG AACCCTACCC CGACGTAGAC
ATATTAGTCA TTGAGAGCAC CTATGGGGAT CCAAGTTTCC ACTTTGAGCC ACGTGACAAT
GTATATGATA ATATAATTGA CTTAGCGGAA AGAACAGTGA GGAAGGGACT CAGGTTGGTG
CTTTCAGGTT TTGCACTTGG TAAGGGGCAG GAATTATATA AGCTGCTCAT TAGTAATGGA
TTCAATGCGG CAATGGATAA GAACGTGTAT TCACTCAATA GAATACTATT GAATGTGGGG
GCAATATCCA GTAATGGTGA CATCATAGTT GCTGACATGC CTCCCAGGAT TCAACCAAGT
AATGATTCAG TAATAGCATT AGTAACAGGT GGTGCTCCTG GAAGGTGGAT TAGGAGGCAT
GTTCACATTC AGTTAAGTAG TCATAGTGAC TTCAATGGAT TAGTTGACTT TGCGGTTAAC
TCGAGAGCGA AGAGAATATA CACTATTTAC GGTCATAGCG AAAAACTAGC TAGGCATCTG
AGGCTTGAGT ATGGTTTAAA CTCATACCCC ATACCTAATA ATACGTTAAT TTAA
|
|---|
| Protein sequence | MISVIRRFGG IEVSCCGHSI LVDPTRRFID NYDAVLITHG HSDHYTSHIS KARRIIMSGE
TLKILREFRG LRLGAGVTVA YPNRPIVFDD FSVVPLNAGH VMGSLMYLIE FKFGSVLLTG
DMNIEDSIIL KGAEPYPDVD ILVIESTYGD PSFHFEPRDN VYDNIIDLAE RTVRKGLRLV
LSGFALGKGQ ELYKLLISNG FNAAMDKNVY SLNRILLNVG AISSNGDIIV ADMPPRIQPS
NDSVIALVTG GAPGRWIRRH VHIQLSSHSD FNGLVDFAVN SRAKRIYTIY GHSEKLARHL
RLEYGLNSYP IPNNTLI
|
|---|
| |