| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0772 |
|---|
| Symbol | |
|---|
| ID | 5708769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 806466 |
|---|
| End bp | 807182 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641275275 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001540597 |
|---|
| Protein GI | 159041345 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTCA TTGAGTGTAG GGATGTTTGG AAGTACTACG GCGATTACCC AGCCTTAAGG
GAAGTTGATT TAACAATCAA TGAGGGTGAA TTCCACTGCG TAATCGGACC CAGTGGTAGT
GGTAAAACCA CATTACTAAG CCTAATAGGT GGTCTTGATA GGGTTAGTAA AGGTTATTTG
AGGGTGGGGT CTTATGAGCT TCATAATCTC GGTGATAGTG AACTAGATGA ATACAGGAAT
AAGTACGTTG GCTTCGTCTT TCAATTATTC TACCTAATAC CACGCATGAA TGTTGTTGAG
AACGTTGAAT TACCATTAAT AGCCAGGGGA GTTGGTTTAA GGGAGAGGAG GAAGCTGGCT
CTTGAGGCGC TTGAGGCTGT GGGTATGAGG GATAAGGCCT ACAGGAAGCC AAGTCAATTA
AGTGGTGGTG AACAGCAGAG GGTCGCTATT GCAAGGGCTA TTGTAACTCG ACCAAGGCTA
CTCCTTGCTG ATGAACCAAC AGGTAACCTT GATAGCAAGT CAGCTGTTAA TGTAATGGAG
ATCTTCAGGA GGCTTAACCA TGAGTTAGGA ATGACTATAA TAATGGTTAC TCACAACCTT
GAGCTAATTA GGTACTGTCA CAGGGTCTCA AGGATAAGCG ACGGTAGAAT AACCAGAACC
TACAGTGTCT CTGAGGCCAA GAACTACGAT GAGTTAATTA GAGAATTAGC TGAGTGA
|
|---|
| Protein sequence | MAFIECRDVW KYYGDYPALR EVDLTINEGE FHCVIGPSGS GKTTLLSLIG GLDRVSKGYL
RVGSYELHNL GDSELDEYRN KYVGFVFQLF YLIPRMNVVE NVELPLIARG VGLRERRKLA
LEALEAVGMR DKAYRKPSQL SGGEQQRVAI ARAIVTRPRL LLADEPTGNL DSKSAVNVME
IFRRLNHELG MTIIMVTHNL ELIRYCHRVS RISDGRITRT YSVSEAKNYD ELIRELAE
|
|---|
| |