| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0611 |
|---|
| Symbol | upp |
|---|
| ID | 5710193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 644952 |
|---|
| End bp | 645611 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641275112 |
|---|
| Product | uracil phosphoribosyltransferase |
|---|
| Protein accession | YP_001540442 |
|---|
| Protein GI | 159041190 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0035] Uracil phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.736678 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGAGGG TGATAATTGT TGATCATCCC CTGGCCCAGG ACATATTAAC AACACTTAGG
GATAAGAGGA CGGGCCAAAT TGAGTTTAGG AAGGGGTTGG TTAGGCTTGG TAGGTTAGTG
GGTTATGAGA TAATTAAGTC CTTTGAAACC TATAATGTGG AGGTTGAGAC ACCCCTTGGT
GTTAAGGCTA GGGGGATTAG GATTAAGGAT GTTGATAAGG TCATAATAGT TCAGGTACTT
AGGGCGGCAA TGCCCATGGT TGAGGGTCTT CTTAAGGCCT TCCCAGCGGC TAGAATAGGT
GTTGTTAGCG CCAGGAGGGT TGAGAATACT CATGTGCCTG GTTCAATGGA GTTTCAAATA
GATGTCGGTT ACTATAGGAT TCCTGAAATA CATGGTGACG ATACGTTAAT TGTGGTTGAC
CCAATGTTAG CCACCGGGTC AACAATATTA TCCACCTTAA ACATAGTGTA TAGGCATGGT
AAACCTAAGA GAACTATTAC AGTTCACGTA ATAGGCACTA GGTACGCCAT AGATAGGGTA
CTAGCCAAGT ACCCGGATAT TGACGTTTAC CTAGTTGCCG TTGACCCTGA GTTGAATGAG
AGGGGATTCA TTGTACCTGG GCTTGGGGAC GCTGGGGATA GGGCCTACGG TGAAGCCTAG
|
|---|
| Protein sequence | MGRVIIVDHP LAQDILTTLR DKRTGQIEFR KGLVRLGRLV GYEIIKSFET YNVEVETPLG
VKARGIRIKD VDKVIIVQVL RAAMPMVEGL LKAFPAARIG VVSARRVENT HVPGSMEFQI
DVGYYRIPEI HGDDTLIVVD PMLATGSTIL STLNIVYRHG KPKRTITVHV IGTRYAIDRV
LAKYPDIDVY LVAVDPELNE RGFIVPGLGD AGDRAYGEA
|
|---|
| |