| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0551 |
|---|
| Symbol | |
|---|
| ID | 5710463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 583224 |
|---|
| End bp | 583988 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641275054 |
|---|
| Product | bacterio-opsin activator |
|---|
| Protein accession | YP_001540384 |
|---|
| Protein GI | 159041132 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3413] Predicted DNA binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.199314 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATGACA CTGAGGCATT AATGTTACTT AATGGTTTAC TTAACTCACC TAGGTTAGTT
TACCTAGATT ACTATCATTA CTCAGACTGG ACTGTTAAGG TTTCTGAACT TAACCTTGAG
TATAGGGTTT TAAGCAGTTT CGTTGACTCC TCTTCACCAT TCATAGTGGA GTATGCTCTG
GTGAGGGTTG GTAGTAGGCT TGACTTTAAG AATTTCCTTA AGACCTTGAA TAGTCATAGG
AATGTCTTAA GTATTGATGA TGTTAAACCC ATTAACTCCA CTTACCCTAG GTTAATTAGA
ATGGTTGTTA GGGGTGATTA CGCGGACTCC ACTAGGTTTA AGGCTCACAT TCTTGGTGGT
TTAGAGATAG GGTACAGTAC CAGTGGTGGT GTTGAGCATT GGGTCTTCCT GTTCCCGAGT
AGTAAGGCTG TTGACATGTT TATAGGGATT ATTAGTGGTA ATGGTGAGGT GGGTAGAGTA
AGGGAGAGTG CGGTGAATCC TGAGGATGTG GTGGCAGCCA TAGTGAGGAG TAAGGTTAAG
GTACTGTTGA GTAGTGATGA GGAGAAGTTG TTAAGGATAG CTCATGAGAA TGGGTTATTT
GATACGCCGA GGAGGATAAC GGTAAGGCAG TTGGCTAAGG AATTGGGTGT GAGTGAATCA
ACATTATCCA GGAATTTAAG TAGAGTAATT AAGAGGGTGC TGAACATTAT AATTAATGAT
GAATTCAATC CATTAGATGA TGAAACACTT CGCTTCACTC CTTAA
|
|---|
| Protein sequence | MYDTEALMLL NGLLNSPRLV YLDYYHYSDW TVKVSELNLE YRVLSSFVDS SSPFIVEYAL
VRVGSRLDFK NFLKTLNSHR NVLSIDDVKP INSTYPRLIR MVVRGDYADS TRFKAHILGG
LEIGYSTSGG VEHWVFLFPS SKAVDMFIGI ISGNGEVGRV RESAVNPEDV VAAIVRSKVK
VLLSSDEEKL LRIAHENGLF DTPRRITVRQ LAKELGVSES TLSRNLSRVI KRVLNIIIND
EFNPLDDETL RFTP
|
|---|
| |