| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0470 |
|---|
| Symbol | |
|---|
| ID | 5709820 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 509622 |
|---|
| End bp | 510338 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641274973 |
|---|
| Product | carboxymuconolactone decarboxylase |
|---|
| Protein accession | YP_001540305 |
|---|
| Protein GI | 159041053 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
[COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0123066 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.044727 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTATTA AACACAGTAG TTCCCAGGTA TCGGAACAGG GTTCAGTGGA GTATTTTACT
GGAAGCGCAC ACGTGTACCA GCTCATTGAT GCGTTGAGGA TTAACGTAAC CATGGTTACC
CTTGAGCCGG GTACTAGGAC TGTTTGGCAC ATTCACCCTC TTGGCCAAGT CATTGTGATC
ATGCATGGGC GTGGTTTAGT GCAGCGTTGG GGTGAGTCAA TTAGTGAGGT TAATCAAGGT
GATGTTATTT GGGTTGAACC AGGGGAGAAG CATTGGCAGG GTGCAACCGT TAATTCACCG
GTAAGCTACA TTGAGGTTAC TGAGCCACTT AATGGTAAGG TTGTTGAGTT AATGGAGAGG
GTTAGTGATG AAGAGTATTC TAAACATGGG CCTACCACTG CGCAACGCCA AGTCACCCCC
TTCTCAGACA TAGCACCAGC CCTAGCCCAC TACACTGACC ATGTTCTCTT CGGTGATGTT
TGGAATAGGC CCGGTCTTTC ACCAAGGGAT AGGAGCCTAG TAACTGTGGC TGCACTTGTG
GCGTTGTATA GGGTTAATGA GTTACCGTTT CACTTAAGGA GGGCTATTGA GAATGGTGTA
AGTAAAGATG AGTTAATTGA ATTAATAACA CACCTAGCCT TCTACTCAGG TTGGCCAACG
GCAAGCACAG CATTATCAAT AGCCAGGAAG GTTTTTGAGG AACTTGGGGT AAAGTAA
|
|---|
| Protein sequence | MIIKHSSSQV SEQGSVEYFT GSAHVYQLID ALRINVTMVT LEPGTRTVWH IHPLGQVIVI
MHGRGLVQRW GESISEVNQG DVIWVEPGEK HWQGATVNSP VSYIEVTEPL NGKVVELMER
VSDEEYSKHG PTTAQRQVTP FSDIAPALAH YTDHVLFGDV WNRPGLSPRD RSLVTVAALV
ALYRVNELPF HLRRAIENGV SKDELIELIT HLAFYSGWPT ASTALSIARK VFEELGVK
|
|---|
| |