Gene Cmaq_0424 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCmaq_0424 
Symbol 
ID5709528 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCaldivirga maquilingensis IC-167 
KingdomArchaea 
Replicon accessionNC_009954 
Strand
Start bp458197 
End bp459666 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content44% 
IMG OID641274927 
Producttype II secretion system protein E 
Protein accessionYP_001540259 
Protein GI159041007 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value0.983223 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGTTA CTGATTACGC TGCATTAGAT GGATTAGTCC AAGTATCGAT ACTAATGAGT 
AGGGATGGCC AATACATTTA CTGGGTTGAG GAACCTAAGT TAAGTAAGGA GGAGGAGAAG
CTACTCCTAA GGATTAGGGA TGAGTTAGTG AGGTTAATGA GCGCTAAGAA TGCGCCATCA
ATATACGATT ACGGTAATGT TAAGGAGTAC GTTAAGGGTA TTGCTGAATC ATTAATTAGG
CGTTACGCAC CCGGTATTAG CACTGAGGGG GTTAGGAGAA TAATGTACTA CATATTGAAG
AACACTGTTG GCTTCGGTTC CATTGAGCCT CTTGTTAATG ATCCTAGGGT TGAGGATATT
CACATTAATG GCCCAGATAG GAGTGTTTAC GTGTGGCATA ATAGGTATGG TCATATTAAG
ACTAATATAA GCATCAGTGA TGATGAGTTA AACAGGTTAG TGACCCTCCT CTCCCAGAGG
ATAAGGAGGA ACCCCAGTTC AGCGTCACCA ATACTTGAGG GACTTCTAAT ACCTGAGAAC
CTAAGGGTTG AGATACTGCT TAGGGATGTT GCCTCAATAG GCCCAGTGAT TACTATTAGG
AAGTTTAGGG AAGCGCCTTT AACCGTAGTG GAGATGATTA AGCTAGGTAC CTTAAGCAGT
AGGCTGGCTG CCTACCTATG GTTCATGCTT GACCACGGAG TCAGCATACT CATAATAGGA
CCCACTGGCG CAGGGAAGAC CACACTACTT AATGCACTAC TCTTCCTCGT CAGGAATGGG
CTCAGGATAA TTACAATTGA GGATGCTAGG GAATTATATC TGCTTCACGA CCACTGGGTG
CCCCTGGTGG CTAGGACCTC TGAGGCTCCC GGTGTAGCTA ATGTTGATCT GTATGAATTG
GTTAAGGTAT CCATGAGGCT TAGGCCCGAT TACATTGTTG TTGGTGAATT AAGGGGTGAG
GAATCATACG TCTTCTTCCA GGCATTGGCA AGTGGGCACA CTGGATTATC CACACTTCAC
GCCTACTCAG CTGAAATGGC GATTAGGAGA CTGTTGTCTA AACCCATGGA AATACCTGCA
ACACTATTAA CGTCACTGGG CGTTATTGTG CAGATAAGCG TCGTGGCTAA GAATGATGAG
ATAACCAGGA GGGTTACTAG GGTTGAGGAG GTTATTGATG TTCAGGAGGA TAGACCTGTG
CTTAACAGGG TTTTTGAATG GAGGAGGAGT GATGATAGTA TAGTTAATGC GAATGATTCA
GTACTAGTGA GTAGGATTAT TGAGAACCAC GCCCTACAAC CTGATGAGGT TAAGGCTGAG
TTGGATAGGA GGGAGAAATT CATATCACTC ATGGTTAAGA ACAACATAAC ATCCCCCAGC
AGTGTCTTTG AAATAATAAA TAAGTACTAC ATGAACCCTG AGGAGGCCTT CAATGAGTTG
AATAAAGGCA AGACCAGTGA GGGTAAGTGA
 
Protein sequence
MHVTDYAALD GLVQVSILMS RDGQYIYWVE EPKLSKEEEK LLLRIRDELV RLMSAKNAPS 
IYDYGNVKEY VKGIAESLIR RYAPGISTEG VRRIMYYILK NTVGFGSIEP LVNDPRVEDI
HINGPDRSVY VWHNRYGHIK TNISISDDEL NRLVTLLSQR IRRNPSSASP ILEGLLIPEN
LRVEILLRDV ASIGPVITIR KFREAPLTVV EMIKLGTLSS RLAAYLWFML DHGVSILIIG
PTGAGKTTLL NALLFLVRNG LRIITIEDAR ELYLLHDHWV PLVARTSEAP GVANVDLYEL
VKVSMRLRPD YIVVGELRGE ESYVFFQALA SGHTGLSTLH AYSAEMAIRR LLSKPMEIPA
TLLTSLGVIV QISVVAKNDE ITRRVTRVEE VIDVQEDRPV LNRVFEWRRS DDSIVNANDS
VLVSRIIENH ALQPDEVKAE LDRREKFISL MVKNNITSPS SVFEIINKYY MNPEEAFNEL
NKGKTSEGK