| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0366 |
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| Symbol | |
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| ID | 5710093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | + |
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| Start bp | 403204 |
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| End bp | 403926 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641274868 |
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| Product | exosome complex RNA-binding protein Rrp4 |
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| Protein accession | YP_001540202 |
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| Protein GI | 159040950 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1097] RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTAACG TTACTGATAG GATGATAGTG CTGCCTGGGG ATTTAATTGG TGGGAGGAGT
AATGATTACG TCATAGTTGG GTCAGTGTAC TGGGAGGGTG ATAAGGCGTA CGCCTCAACA
GTAGCTATGA TTAATATTAA GGGTGACGTG AAGCCAATGG AGGTTCAAGT AATACCACTG
AATGGAGCCT ATAAGCCGAG GCAGGGGGAT ATAGTGATAG GCTACGTAAT AGATATACTG
GTTAACGGGT GGGAGATTGA CATTAAGTCC CCGTACTCGG CCTACTTACC CATTAATGAA
GCCACATTGA AGCCTGTTGA TGTCGTCACC GCAGATTTAA GAAACATACT TAACATAGGT
GATATTGTTC TCGCTAAAAT AAGCGACTTC AATCTAGCTA AGGATTACCC AGTGACATTA
ACCATAAAGG AATCTAGGCT AGGTAGGATT GAGGATGGGA CTGTTATTGA AATAGACCCA
GTTAAAGTAC CCAGGGTTAT AGGGAAGAGG GGATCTATGG TGAATATGTT TAAGGATGAA
CTTAACTGCG ACGTAACGGT GGGCCAGAAT GGTAGGATAT GGGTTAGGTG TAGGAATAAA
CGTGATGAAT TATTCGTATC ACAGACTATT AAATTCATTG AGAAGGAGAG TCATCAAAGT
GGATTAATGG ATAAGGTTAA GGCAATAATA CAGAATTATA AGTCTACATC AGGGTTACCG
TAA
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| Protein sequence | MLNVTDRMIV LPGDLIGGRS NDYVIVGSVY WEGDKAYAST VAMINIKGDV KPMEVQVIPL
NGAYKPRQGD IVIGYVIDIL VNGWEIDIKS PYSAYLPINE ATLKPVDVVT ADLRNILNIG
DIVLAKISDF NLAKDYPVTL TIKESRLGRI EDGTVIEIDP VKVPRVIGKR GSMVNMFKDE
LNCDVTVGQN GRIWVRCRNK RDELFVSQTI KFIEKESHQS GLMDKVKAII QNYKSTSGLP
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