| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0348 |
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| Symbol | |
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| ID | 5709199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | - |
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| Start bp | 389053 |
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| End bp | 389631 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641274850 |
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| Product | tRNA-splicing endonuclease subunit alpha |
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| Protein accession | YP_001540184 |
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| Protein GI | 159040932 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1676] tRNA splicing endonuclease |
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| TIGRFAM ID | [TIGR00324] tRNA intron endonuclease |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCAGG GTGCTAGAGG GAGGACTATT GCTAAGTATA GGGGGGTACT TAAGGGTGAT
AAGGTTATTA TACCTAGTAT TGATGAATCC AGGGCACTCT ATAAGCTTGG CTTCTTCGGT
AAATTCCTAG GTAAGGATAA GATTAAGATT GAGGAAGTTG ATTCAGTGGA TTCCCCACTA
CACCTGTCGC CGCTTGAGGC GCTTTACCTA GTTGAATTAG GTCTACTGGA GGTTGTTGAT
AATGGTTCAG TGGTGGGTAG GGGTACCCTT AAGGAGTTTG TGGAGGGGAG GTATGAGCAT
GGGGAATTGG TTTACGAATT ATACAAGTAC TTTAGGGATA GGGGTTACGT GGTTAGGAGT
GGTTTAAAAT TCGGTTCACT ATACGCAGTT TATGAGAAGG GGCCTGGTAT TGATCATGCA
CCAATGCTGG TTCACTTAAT TGACCCTGGA CGCAACATAA CTGCACTGGA TGTTACCAGG
GCGGCTAGGT TGAGTCATAC GGTTAGGAAA ACCTTCGTAT TGGCTGTTAA GCATATGAAT
AGTCTTAAGT TAATAGGGTT CGAGTGGTGG ACCCCGTAG
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| Protein sequence | MAQGARGRTI AKYRGVLKGD KVIIPSIDES RALYKLGFFG KFLGKDKIKI EEVDSVDSPL
HLSPLEALYL VELGLLEVVD NGSVVGRGTL KEFVEGRYEH GELVYELYKY FRDRGYVVRS
GLKFGSLYAV YEKGPGIDHA PMLVHLIDPG RNITALDVTR AARLSHTVRK TFVLAVKHMN
SLKLIGFEWW TP
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