Gene Cmaq_0288 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCmaq_0288 
Symbol 
ID5708713 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCaldivirga maquilingensis IC-167 
KingdomArchaea 
Replicon accessionNC_009954 
Strand
Start bp327390 
End bp327926 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content36% 
IMG OID641274792 
Producthemerythrin HHE cation binding domain-containing protein 
Protein accessionYP_001540126 
Protein GI159040874 
COG category[S] Function unknown 
COG ID[COG3945] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.00932018 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGTTAGTG TTGAGGATTT AGTGAATAAC CTTATGAATG ACCATGATGT AATCAAGGTA 
TCAGTGAGCA TAGTTGATAA GATGCTTGCG GAGAAGCTAT TAGATCCAAG TGATATAAAT
ATGCTACTGG ATTTCTATGA GTTCTTCGTG GATAAGTGTC ATCATGTTAA GGAGGAGGTT
ATATTGTTCC CATCAATAAA CATTAAACTA TATCCCTTTG AGAATAGTCC AGTGAATGTA
ATGGTGATGG ATCATGGAAT ATTCAGGTAT TTAATAAGGT TGAATAGGGA ATTATTAAGC
AGATTAATTA ATGGTGATCA ATCAATTAAG GACACGCTTA TGGATTATCT AGCATTGATG
ACTGGACACC TTAATCAGCA TATGGAGAAG GAGGATAAGG TGCTTTTCCC TCAGGCAATG
GACTTAGATA ATGTTGAAAG CAGTAGGAGT ATTGAGGATA TTGAAGCCGA GGTGGATCAT
GATAAGTGGC TTCAGGTTAT TGAGAAGCTT AAGGTAAAGT ATTTAAGCAT TGATTAA
 
Protein sequence
MVSVEDLVNN LMNDHDVIKV SVSIVDKMLA EKLLDPSDIN MLLDFYEFFV DKCHHVKEEV 
ILFPSINIKL YPFENSPVNV MVMDHGIFRY LIRLNRELLS RLINGDQSIK DTLMDYLALM
TGHLNQHMEK EDKVLFPQAM DLDNVESSRS IEDIEAEVDH DKWLQVIEKL KVKYLSID