Gene Cmaq_0264 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCmaq_0264 
Symbol 
ID5709697 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCaldivirga maquilingensis IC-167 
KingdomArchaea 
Replicon accessionNC_009954 
Strand
Start bp301962 
End bp303134 
Gene Length1173 bp 
Protein Length390 aa 
Translation table11 
GC content44% 
IMG OID641274767 
Productpeptide chain release factor 1 
Protein accessionYP_001540102 
Protein GI159040850 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1503] Peptide chain release factor 1 (eRF1) 
TIGRFAM ID[TIGR00108] peptide chain release factor eRF/aRF, subunit 1
[TIGR03676] peptide chain release factor 1, archaeal and eukaryotic forms 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000379955 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
TTGTTAAAGG TTGATGGTGT CCTAGGTGGA CGCACTGGAA TAACAGATGG GGAGGAGTTG 
AAGATAATGA TTCAATTACT GAAGAAATAC AGGGGTTATG CAACAACCTT AATATCACTC
TACATTAATG GGGATAGGCC AATACCAGAT GTCTTAAACA TGCTTAGGAA TGAGTGGTCG
GTTGCAAGTA ACATTAAGGA TAAGACAACT AGGACTCATG TTCAAGATGC CTTGGAGAGG
ATAATTAACG CATTAAAGGG TACGGCTAAA GCACCACCCA ATGGTTTAGC GGTATTCGGA
GGCTTCCACA TGGAGAAGCC GGGTAGCTAT AAGTGGGTCA TGTACGCTAT AATACCCCCA
TATAAGATAA GTACGTATAA GTACGTCTGC GATACTCGCT TCCACACTGA GCTCCTTGAG
GATATGATAT CGGCATCATC ATCAGTGTTC GGGATAATAG TTATTGAGAG GGGGGAGGCT
GTCATAGCGT TACTTAAGGG TAGTTACTGG GAGATAGTGG ATAAGGTCGA GTTCTTCGTA
CCCAATAAGC ATCATGCAGG TGGTCAATCA GCCTTAAGGT TTAAGAGACA GACTGAACAC
CTGGCTGAGA CATTCTATAA GCTCGTTGCC GAGGATGCTA ATAAGATACT GCTTCAAATA
CCGAACCTTA AGGGTATTAT TGTAGCTGGC CCAGGGCCAA CTAAGGAGGA CTTCCTTAAG
GAGGGTGGCT TAGATAGTAG ACTCATGGAT AAGATAATTG CAATAGTACC CGCCTGCTGT
GCAGATATTA GTGGTGTATT GGAGGCTATT AAGGCCTCTG AGGATAAGCT TAAGGAGACT
GAGTATGTTA AGGCTAAGAA ACTGATGGAG GAGGTAATGT ATATTGCCGT TAAGAAGCCT
GACTACATAG TCTATGGTAG GGATAACGTG TTGAACGCCA TTGAGAAGGG TATTGCCAAG
GTTGTGTTAA TAAGTGAGGA TATTGGTGAG GATGAGATCT TTAAATTAAC AACAATGCTT
AGGGGTAAGA AAATAGACCT AGTAGTCATA CCGAATAGCG TTGAGGAGAG CCTAACCCTA
AGCAAAACCT TCGGCGGATA CGTGGCCATA TTGGCTACCC CATCATGGAT AATTGAGGAG
TGGGAAAACG CCAGTCAAAG CTTAACTCAG TAG
 
Protein sequence
MLKVDGVLGG RTGITDGEEL KIMIQLLKKY RGYATTLISL YINGDRPIPD VLNMLRNEWS 
VASNIKDKTT RTHVQDALER IINALKGTAK APPNGLAVFG GFHMEKPGSY KWVMYAIIPP
YKISTYKYVC DTRFHTELLE DMISASSSVF GIIVIERGEA VIALLKGSYW EIVDKVEFFV
PNKHHAGGQS ALRFKRQTEH LAETFYKLVA EDANKILLQI PNLKGIIVAG PGPTKEDFLK
EGGLDSRLMD KIIAIVPACC ADISGVLEAI KASEDKLKET EYVKAKKLME EVMYIAVKKP
DYIVYGRDNV LNAIEKGIAK VVLISEDIGE DEIFKLTTML RGKKIDLVVI PNSVEESLTL
SKTFGGYVAI LATPSWIIEE WENASQSLTQ