| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0186 |
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| Symbol | |
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| ID | 5710169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | + |
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| Start bp | 223217 |
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| End bp | 224383 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641274689 |
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| Product | DNA-directed RNA polymerase subunit A'' |
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| Protein accession | YP_001540025 |
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| Protein GI | 159040773 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02389] DNA-directed RNA polymerase, subunit A'' |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.23622 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCTGAGC AGTACCTAAG CCAAGAGGAG GTTAGGTCAA GGATTGAGAC CCTTAAGGAG
GTGTTACCCA GTAGGTTAGT TAATGAACTG CTTAATAGGT TGAATAACGT TAAGTTATCT
GATAGGCAAC TTGAGAGAGT TATGAAGGCT GTTGTGGCTG AGTACTATAA GTCAATAGTT
GATCCAGGTG AGGCAATAGG CATAGTTACT GCTCAAAGTG TTGGTGAACC ATCAACACAA
ATGATATTGA GGACCTTCCA CTACGCCGGT TTAAGGGAGT TCTCAATGGC CTTAGGTTTA
CCTAGGTTAA TTGAGATAAT TGACGCTAGG AGGAAGCCCC AAGTACCTAG GATGACTATT
TACCTTAAAC CAGAGTACGC GCACGATGAA GAGAAGGCTC ATGATGTCGC CAAGAGGATT
CAAGCAATAA CCATTGAGAA CCTAGCTAAG AGCGTTGATG TGGATTACTT CAATTCAACA
ATAATAATAA CCCTTGATGA GGATGCCTTA AGGTACAGGG GGTTAAGTGT TAATGATGTT
AAGAAGGCCT TAGATAGGAT TAAGGGTAAG GCAGGGGAAA TAACCGTTGA GGGTAATTCA
ATAAGTGTGA CTGTTAATGC CCAGGAGGTA TCAGCATTAA AGAAGATGAG GGATAAGATT
CTTCAAACCA AGGTAGCTGG CATAAGGGGG ATTAAGAAGG CCTTAGTTAT GAAGACTGAT
AATAATGAGT ACGTAATATA CACTGAGGGA ACAAACCTCG AGGCGGTACT ACTGCTTGAT
GAGGTTGACT CAACGAGGAC AATATCACAC GACATACATG AGGTTGCTGA GGTACTTGGT
ATTGAGGCTG CAAGAACCAT GATTATGAGG GAACTAAAGG CCGTTCTAGA TGACCAAGGC
CTAGATGTAG ACACCAGGCA CTTAATGATG GTTGCTGACG TAATGACATG GGACGGTAAG
GTTAGGCAGA TTGGGAGGCA TGGTGTAGCA GGCCAGAAAG TCAGTCCATT AGCCAGGGCA
GCCTTTGAGG TAACGGTTAA GAACCTAATT GAAGCAGCCT ACATGGGGGA GAGCGAGAAG
TTTAAGGGCG TTGTGGAGAA CATTATATCA GGCAGGTACG TGCCAATAGG CACTGGTTAC
GTTGAATTAA TGCTTGAGCA TCCGTGA
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| Protein sequence | MAEQYLSQEE VRSRIETLKE VLPSRLVNEL LNRLNNVKLS DRQLERVMKA VVAEYYKSIV
DPGEAIGIVT AQSVGEPSTQ MILRTFHYAG LREFSMALGL PRLIEIIDAR RKPQVPRMTI
YLKPEYAHDE EKAHDVAKRI QAITIENLAK SVDVDYFNST IIITLDEDAL RYRGLSVNDV
KKALDRIKGK AGEITVEGNS ISVTVNAQEV SALKKMRDKI LQTKVAGIRG IKKALVMKTD
NNEYVIYTEG TNLEAVLLLD EVDSTRTISH DIHEVAEVLG IEAARTMIMR ELKAVLDDQG
LDVDTRHLMM VADVMTWDGK VRQIGRHGVA GQKVSPLARA AFEVTVKNLI EAAYMGESEK
FKGVVENIIS GRYVPIGTGY VELMLEHP
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