| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0185 |
|---|
| Symbol | |
|---|
| ID | 5710168 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 220555 |
|---|
| End bp | 223224 |
|---|
| Gene Length | 2670 bp |
|---|
| Protein Length | 889 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641274688 |
|---|
| Product | DNA-directed RNA polymerase subunit A' |
|---|
| Protein accession | YP_001540024 |
|---|
| Protein GI | 159040772 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02390] DNA-directed RNA polymerase subunit A' |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.144445 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTATT CTAATCAGGG AAGCGGTGAG GATAATATAC CGCTTAAGGT AATTAAGGAA
ATAAGCTTCA ACGTCCTCTC ACCAGATTTA ATACGAAAAA TGTCGGTAAT GGAGGTAACA
ACCTCAGAGA CTTATGATGA AGCCGGCAAC CCAGTTAAAG GCGGGTTAAT GGATAGGAGA
CTGGGTGTTG ATGAACCTGA GGCTAGGTGC GAGACCTGTG GCAATGACTG GAGGAGGTGC
CCTGGACACT TCGGTAGGAT TGAGTTAGTT AGACCTGTTG TTCACCCTGA GTTCGTTAAA
CCCATTTACG ATATACTGAG GGCAACATGC CCTAATTGCG GGAGATTGAA GCTAACTGAT
GAGGAGTATA AGAGGTATTC TGAGAGGATT AAGAGGCTTA AGAAGCATTG GAGAGCCCTC
TCCGATAGGC TTATTCTCAG GGTTAAGAAG AAGGCCGCGG CTAGGTCAAC ATGCCCACAC
TGCGGTGCAC CTCAACCTAA GATTAGGCTT GATAAGCCAT TCAAGTTCTA CACTGAGTCC
GAGGATGGTA GGTTAACTAG GCTTGACCCA GTTAGCATAA GGGAGTGGCT TGAGAAGGTG
CCTGACGATG ACCTTGAATT ACTCGGCTGG AACCCCTCAA CAGCCAGACC AGAGTGGGCT
GTCTTAACGG TTTTACCCGT ACCACCACCT CAAGTTAGGC CATCAATACA ATTACCCAGT
GGCCAAACCA GTGCAGATGA CTTAACCCAC GCCTTAACAA CAATACTTAG GTATAATGAG
AAGCTTAGAA ACGCCATAGA GTCCGGTTCA CCCACAACCT CTATTCTTGA TCTTTGGGAC
TCGCTTCAAG CCAATGTAGC CACATACATT GATAATGAAC TACCCGGTGG TATTCAGGCT
AGGCATAGGA GTAAGAGGCC GCTTAAGGGT ATTGCCCAGA GGCTTAAGGG GAAGGAGGGT
AGGTTTAGGG GTAGCTTATC AGGTAAGAGG GTTGAGTTCT CAGCTAGGAC TGTGATTAGC
CCTGACCCTA ATTTAAGCAT TAATGAGGTT GGTGTACCAA TTGATATAGC TAAGGAGCTG
ACTGTGGTGG AGCCTGTTAC TGAGTGGAAT ATTGACTTAA TGAGGATGCT TGTTGTTAAT
GGACCTGAGA CCTGGCCTGG GGCTAATAGG GTTATTACGC CTGATGGTAA GAAGATTGAG
CTTAAGGTTA GGAGGGATAG GAGTGAATTA GCCCAGCAGA TTCAGCCAGG TTGGATGATT
GAGAGGCATT TAATGGATGG TGACTACGTC CTCTTCAATA GGCAACCAAG CCTCCATAAG
ATGTCAATGA TGTGCCACAT AGTTAAGGTA CTTCCAGGTA GAACCTTCAG GCTTCACTTA
GCAGTATGCC CACCCTATAA CGCTGACTTC GATGGAGATG AAATGAACCT CCACGTACCC
CAGACCCCTG AGGCTAGGGC TGAGGCTAGG ACTATAATGC TTGTTCAAAA CTTCATAGTG
ACACCCAGGT ACGGTGGCCC GATAATAGGT GCTAGGCAGG ATTACATAAG TGGAGGCTAC
TTACTCTCAA GGAAGGGGAA TGTGTTAACC AGGGAGAAGG CACTATTCAT ACTCGGCGCC
GTTAGGGAGA ATGTGCAGCT TGAGGAACCA GCAATAATGC ATCCTGTGGA GCTTTGGACG
GGTAAGCAGA TAATATCAAC ACTACTGCCT AAGGACTTCA ACTTCACTCA GGCAACATCC
TTCAAGTCAA CGTGCAGTGA CCCATATAGG TGTGATACTG ATGAGTACAT TGTGGTTGTT
AACGGTTACT TAGCCACTGG TGTGCTTGAT AAGAAGTCCA TTGGCGCTGA GCAGGTTGAT
TCACTGCTTC ACGTACTAGT TAAGAGGTAT GGTAATGAAT TCGGTAGGAG GTGGATTGAC
TCAATGTTCA GATTAATAAT AAGGTACATT GACATAAGGG GCTTCACAAT GGCCCTTGAC
TCACTTAACC TACCTGAGGA TGCAATGAAG AAGCTTGATG AGGTTAAGAA CACCTACATT
AAGGAGGCCT ATGAATTACT GGATAAGTAC TATAAGGGTG CACTTGAGGC TGAGCCAGGT
AAGACTATTG AGGAGACCCT TGAGGATAAG TTAGCTGAAA CATTATCAAA GATTAGGGAG
GAGGCCTCTA AGATAGTTGA CGACTACATG AATAAGGAGT CCGAGGTTTA CATAATGGCT
AAGACGGGTG CAAGGGGTAG TCTACTGAAT GCCGCTCAAA TGACCGCCGC CCTAGGTCAA
CAAACAATAA GGGGTGAGAG GTATAGGCGT GGCTTCACCG ACAGGACCCT ACCCCACTTC
CTACCTGGCG ATAAGGGACC TGAGGCTAGG GGCTTCGTTA AGAGTAACTT CAGGGATGGA
TTATCACCAA TAGAGTACTT CTTCCACGCC GGTGGCGGTA GAGATGGATT AGTTGAAACC
GCGGTAAGGA CATCTCAAAG CGGCTACGCG CAGAGGAGGC TTATTAATGC AATGCAGGAT
ATTTACGTTG CCTACGACGG GACAGTTAGG GATTCACAGG ATGCAATAAT TCAATTCAAG
TACGGTGAGG ATGGTATAGA CGTCTCCAAG AGTGACCACG GTAGGTTAAA TATAGATGAA
ATAATAAGGA GGGTGATGAC AAGTGGCTGA
|
|---|
| Protein sequence | MSYSNQGSGE DNIPLKVIKE ISFNVLSPDL IRKMSVMEVT TSETYDEAGN PVKGGLMDRR
LGVDEPEARC ETCGNDWRRC PGHFGRIELV RPVVHPEFVK PIYDILRATC PNCGRLKLTD
EEYKRYSERI KRLKKHWRAL SDRLILRVKK KAAARSTCPH CGAPQPKIRL DKPFKFYTES
EDGRLTRLDP VSIREWLEKV PDDDLELLGW NPSTARPEWA VLTVLPVPPP QVRPSIQLPS
GQTSADDLTH ALTTILRYNE KLRNAIESGS PTTSILDLWD SLQANVATYI DNELPGGIQA
RHRSKRPLKG IAQRLKGKEG RFRGSLSGKR VEFSARTVIS PDPNLSINEV GVPIDIAKEL
TVVEPVTEWN IDLMRMLVVN GPETWPGANR VITPDGKKIE LKVRRDRSEL AQQIQPGWMI
ERHLMDGDYV LFNRQPSLHK MSMMCHIVKV LPGRTFRLHL AVCPPYNADF DGDEMNLHVP
QTPEARAEAR TIMLVQNFIV TPRYGGPIIG ARQDYISGGY LLSRKGNVLT REKALFILGA
VRENVQLEEP AIMHPVELWT GKQIISTLLP KDFNFTQATS FKSTCSDPYR CDTDEYIVVV
NGYLATGVLD KKSIGAEQVD SLLHVLVKRY GNEFGRRWID SMFRLIIRYI DIRGFTMALD
SLNLPEDAMK KLDEVKNTYI KEAYELLDKY YKGALEAEPG KTIEETLEDK LAETLSKIRE
EASKIVDDYM NKESEVYIMA KTGARGSLLN AAQMTAALGQ QTIRGERYRR GFTDRTLPHF
LPGDKGPEAR GFVKSNFRDG LSPIEYFFHA GGGRDGLVET AVRTSQSGYA QRRLINAMQD
IYVAYDGTVR DSQDAIIQFK YGEDGIDVSK SDHGRLNIDE IIRRVMTSG
|
|---|
| |