| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0175 |
|---|
| Symbol | |
|---|
| ID | 5708721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 207595 |
|---|
| End bp | 209547 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641274678 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001540014 |
|---|
| Protein GI | 159040762 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1293] Predicted RNA-binding protein homologous to eukaryotic snRNP |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.432348 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCTAAGC CTGTGCCCGT TAAGAAGACC CTTAATGCGC TTGACTTAGT GGCCATAGCG
GTTGAGCTTA ACGCCACGTT GAGTGGTGGG AGGTTGATTA GGGTTTATAG GCTTGGTGAC
TCGCATTACT TTAAGATTAG GGCATCTGAT GTAGCCTACC TTATCGCTAA CCCAAGGAGG
ATTAGTCGAA CCTGGAGGAT ACCTCAAGGC TTATCCCCCA GTCCCCTTAG GAGGTTTATT
GAGGACTGCG TGATAAATAG GTTTGAGGCT AACTTAGATA GGGTGATGAG TATTGACTTA
AACTGCGGTA GACTCACCAT TGAATTAATA CCACCCTTCA ACATGGTGTT CACTGTTGAT
GGTAAGGTTA AGTGGCTTCT ACACGAGTAC AGGGGTAAGG ATAGGGAGGT TAAGGTTGGA
TCAACCTACA TTGAACCCCC GAGGAGGTTC CTGGATCCAA GGTTCTTCGA TAATCTACTT
AAGCTCATTG AGGATTCAGG CTTAAGTGAT GAAGCCTTAG CTAAGGGTCT TGGGTTAGGT
ACTGATTGGG CCAGGGAGGT TTGCACCAGG TCTGGGTGCA GTGACCCGGT TCTAGTATGG
GGAAGTATTA GGGGTATTCT TGAGGTTCTT CACTTAGGTA GGCTTAAGCC AGTCATATAT
GCTTCACCAT CATACGTATC CCCCATACCC CTTAGCTCAA TTAAGGGTGA GTTCAAGGAG
GTTGAGAGCT TCAATAAGGC TGTTGACGAT TACTTCACCT CAATTGAGGT TGAGAGGGTT
GCTGAGGAGA GGGTTAAGGG TATTGAGGAT GAGATTGCTA GGCTTGAGTC ATCCATTAAG
GAACTTGAGG ACACCGTGGG TGGTTACTTA AGGGAGGCTG AGAACCTTAG GAGGAGGGGT
GAGTTAATCA TGGGTAGGCT CTATGAGTTT AGTGAGCTTC ATGAGGCGCT GCTGCGCGCC
TACATGGCTG ATAAGGATTC CTTCAAGGCT AAGGTTAAGG GTATTGAGTA TGGTGGCATT
AAGGTGATTG ATTATGATCC ATTGAGGAAG ACAGTGAAGG TTACGGTGAA TAATAATGAG
GTTGAGTTAA CATTGGGGGA GAGTCCTGGG GAGACGGCGG CCAAGTACTT TGAGGAGGCT
AAGAGACTGG AGAAGAAGGC TAAGGCGGCT GAGGCTAAGT TAACGGAATT AAGGGGTAAG
GTGAATGAAT TAAGGAGTAG GGTTAATGAA GCCACTGAGG AGACTAGGGC GGCAGTTAGA
TTCGTGGCCA GTAGGGAGTG GTTTGAGAGG TTTAGGTGGT TCATAACCAG TGGTGGTTCA
CCGGTCCTAG CTGGTAAGGA TGCTGGGCAG AATGAGGCCA TTGTTAAGAG GTACATGAAT
CCATGGGACC TCTTTCTTCA CGCTGATGTT CAAGGAGGCC CAGTGACGGT GATTAAGGTT
ACTAGGGGCC AGGAGGTTAA GCAACAGGAC TTAATTGAGG CTGCTCAATA CGCCGCAGCC
TACTCCAAGG CTTGGAAGCT TGGGGCTAAT TCAATAGACG TCTACTACGT TAAGGGTGAG
CAGGTTAGTA AGAAGGCGCC CAGTGGCGAG TACTTGTCTA AGGGTGGATT CATGATATAT
GGACAGAGGG GGTGGGTTAG GGGTGTTGAG TTAATTATTA GTGTGGGTTT AAGGATTGAC
GGTGACGTGA TTAGGCTAGT ATCAGCACCA CCAACAGCCA TGGGTTCACT GGCGAATTAC
TACATTACCC TTAAGCCAGG TAACAGTGAG AGGAGTGAGG TTGCTGGTAG GATTAGGGAA
TTATTCATTA AGAGGTATCC TGAGGCTAGG CAAATACCTG TGGATCATAT TATTGAGCAT
GTGCCAGGGC CATCAGTGGT AATTGAGTCT AATGAAGGTA ACCCAATCAC CTGGGATACT
GTTAAGGGGA TTTTCAATAA GGTTGCTGGT TAA
|
|---|
| Protein sequence | MPKPVPVKKT LNALDLVAIA VELNATLSGG RLIRVYRLGD SHYFKIRASD VAYLIANPRR
ISRTWRIPQG LSPSPLRRFI EDCVINRFEA NLDRVMSIDL NCGRLTIELI PPFNMVFTVD
GKVKWLLHEY RGKDREVKVG STYIEPPRRF LDPRFFDNLL KLIEDSGLSD EALAKGLGLG
TDWAREVCTR SGCSDPVLVW GSIRGILEVL HLGRLKPVIY ASPSYVSPIP LSSIKGEFKE
VESFNKAVDD YFTSIEVERV AEERVKGIED EIARLESSIK ELEDTVGGYL REAENLRRRG
ELIMGRLYEF SELHEALLRA YMADKDSFKA KVKGIEYGGI KVIDYDPLRK TVKVTVNNNE
VELTLGESPG ETAAKYFEEA KRLEKKAKAA EAKLTELRGK VNELRSRVNE ATEETRAAVR
FVASREWFER FRWFITSGGS PVLAGKDAGQ NEAIVKRYMN PWDLFLHADV QGGPVTVIKV
TRGQEVKQQD LIEAAQYAAA YSKAWKLGAN SIDVYYVKGE QVSKKAPSGE YLSKGGFMIY
GQRGWVRGVE LIISVGLRID GDVIRLVSAP PTAMGSLANY YITLKPGNSE RSEVAGRIRE
LFIKRYPEAR QIPVDHIIEH VPGPSVVIES NEGNPITWDT VKGIFNKVAG
|
|---|
| |