| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_5089 |
|---|
| Symbol | |
|---|
| ID | 5704057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 5761771 |
|---|
| End bp | 5762334 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641274481 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001539822 |
|---|
| Protein GI | 159040569 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02983] RNA polymerase sigma-70 factor, sigma-E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000477655 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTCCAACG GCATCGACGG GGACTTCACC GCGTTCGTCA AGGAGCGGAG TGGCGTTCTG
CTGCGCGCCG CCCGCGCCCT GGCCGGAAGT CAGCACAGCG CCGAGGACCT ACTACAGACC
GCGTTGGCCA AGGCGTACGT CCGGTGGCCA CGGATTCGGG GTGACGCCGA GCCGTACGTT
CGCCGCATCC TCTACCTGAA CCAGGTGTCC AGATGCCGGC GCCGTTCCGG TCGCCCGGAG
TTCCCGGTCG CCGTGCTGCC CGACGTCGGC GAACCCGACA GCGAACACGA GGTGGACCTA
CGGCTTCTGC TACGAGAGGC GCTGCTGGCG CTGCCACCGC GGCAACGCGC GGTCCTGACC
CTGCGCTATC TGGAAGATCT GAGCGTCAGA CAGACCGCCG AACTGCTCGG CTGCCACGCC
GGCACGGTGG CCAGTCAGAC GGCCCGAGGG CTGGCCCGGC TGCGGCGACT GGTTCCCGCA
CTCGACGGAC ACCCGACCAC AAGGGAAGGT GAACGAATCA AGCGAACAGG CCCGGTAGTC
CCTTCCGGCC GGGCTCGGAG CTGA
|
|---|
| Protein sequence | MSNGIDGDFT AFVKERSGVL LRAARALAGS QHSAEDLLQT ALAKAYVRWP RIRGDAEPYV
RRILYLNQVS RCRRRSGRPE FPVAVLPDVG EPDSEHEVDL RLLLREALLA LPPRQRAVLT
LRYLEDLSVR QTAELLGCHA GTVASQTARG LARLRRLVPA LDGHPTTREG ERIKRTGPVV
PSGRARS
|
|---|
| |