| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_5008 |
|---|
| Symbol | |
|---|
| ID | 5705463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 5677495 |
|---|
| End bp | 5678247 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641274401 |
|---|
| Product | LytTR family two component transcriptional regulator |
|---|
| Protein accession | YP_001539742 |
|---|
| Protein GI | 159040489 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.135227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000288771 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACCGGGT TCCTTCGGGT CCTGGCGGTT GACGACGAGC CACCGGCACT GGACGAACTG
GCGTACCACC TGCGGGCCGA CCCCCGGGTC ACCCGGCTGC ACACCGCCGG CAACGCCACC
GAAGCGTTAC GCGTGCTCCG CGACGGTGAC GTGGACGTGG TGTTCCTCGA CATCCGGATG
CCGGGCCTGG ACGGCATGGA ACTGGCCCGG GTACTGCGGC GCTTCGCCCG TCCGCCGGCC
ATCGTCTTCG TCACCGCCTA CGACGACGGC GCGGTGGACG CGTTCGATCT GGGCGCCACG
GACTACGTCC GCAAGCCGGT CCGGCCCGAG CGGTTGGCCG AGTCACTGCG TCGGGTGGTC
GGCGCGCGGA TGCTTCCCAC GCAGCCGGCG GTGCCGGCCC GGGAGGAGGA TCCGACGATC
CCGGTCGAGC TCGCCGGAAC CACCCGGATG CTGCCCCGGT CGGCGGTGCG CTGGGTGGAG
GCACAGGGTG ACTATGTACG GCTACACACC ACCGACGGTT CCCACCTGGT CCGGGTGTCC
CTGGCGGCTC TGGCCGAGCG GTGGGCTGAC GCGGGCTTCG TTCGGATCCA CCGCTCCTAC
CTGGTCCAGT TGCGGCTCAT CGCCGAGCTG CGGCTGGTGA ACTCCGGCTA CGTGGTAGTG
GTCGACTCGA CCGAGTTGCC GGTCAGCCGG CGGCACACCC GCGAGCTGAA GGACAAGCTG
ATCCGGACGG CCAAGCAGGA CTGGGTCCGC TGA
|
|---|
| Protein sequence | MTGFLRVLAV DDEPPALDEL AYHLRADPRV TRLHTAGNAT EALRVLRDGD VDVVFLDIRM
PGLDGMELAR VLRRFARPPA IVFVTAYDDG AVDAFDLGAT DYVRKPVRPE RLAESLRRVV
GARMLPTQPA VPAREEDPTI PVELAGTTRM LPRSAVRWVE AQGDYVRLHT TDGSHLVRVS
LAALAERWAD AGFVRIHRSY LVQLRLIAEL RLVNSGYVVV VDSTELPVSR RHTRELKDKL
IRTAKQDWVR
|
|---|
| |