Gene Sare_4995 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSare_4995 
Symbol 
ID5705735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora arenicola CNS-205 
KingdomBacteria 
Replicon accessionNC_009953 
Strand
Start bp5664085 
End bp5664996 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content69% 
IMG OID641274388 
Productrhomboid family protein 
Protein accessionYP_001539729 
Protein GI159040476 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.295556 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000450745 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGAGCGAGT CGCCACCGAC CACCCCGGTC TGCTACCGCC ACCCCGGCCG GGAGGCGTAC 
ATCCGGTGCA ACCGTTGTGA CCGGGTCATC TGCCCGGACT GCATGCGCGA GGCATCGGTG
GGCTTCCAGT GCCCGGAGTG TGTCAACGAA GGGCGCCGTA GCGTGCGGCC GACGCGCACC
GCCTTCGGTG GTGGTGTCGT CGGCCAACAC GGCTATGTCA CCAAGGCGTT GATCGCGTTC
AACGCCCTGG TGATGCTGCT CTCCATCAGC ACTGACCGGG GCGGCGACGC GGTGGTGGGG
GGATCCGGCT TCGGCGGGCT GCTCGGCGGT GCCACCCCGT TGACCGAGTG GGGTGCGGTG
CTCGGGCTCG CGGTCCTTCC CGACGGCACC GTGGGTGGCA TCGCCGAGGG CGAGTGGTAC
CGCCTGATCA CCGCGATGTT CCTGCACTAC GGCGTGATCC ACCTGCTGCT GAACATGTAC
GCGCTGTGGA TCCTCGGCCG GAATCTGGAA GCGAGTCTCG GCCCCGCCCG GTTCTTGGCC
CTCTATCTGA TCTCCGGCCT CGGTGGAAAC GTCGCGGCCT ACCTGATCAG CGCGCCGAAC
GCGGCGACCG CGGGCGCGTC CACGGCCATC TTCGGACTCT TTGCGGCCCT GTTCGTCGTC
GGTCGGCGAT TGGGGCGCGA TGTCTCCCAG GTCCTCCCGA TCCTGGTGAT CAACTTGGTC
TTCACGCTGA CCGTACCGGG AATTTCTATC CCCGGTCACC TGGGCGGACT CGTGCTCGGT
GCCCTGATGG CCGTCATCCT CGCGTACGCC CCGCGGTCGC GGCGCACGCT GGTGCAGGTG
GCCGGTGGGA CGGTGCTCGT GGCGGCGCTG CTCGGCCTGG CCCTGATCCG GACCGCGGCC
CTGCTCGCCT GA
 
Protein sequence
MSESPPTTPV CYRHPGREAY IRCNRCDRVI CPDCMREASV GFQCPECVNE GRRSVRPTRT 
AFGGGVVGQH GYVTKALIAF NALVMLLSIS TDRGGDAVVG GSGFGGLLGG ATPLTEWGAV
LGLAVLPDGT VGGIAEGEWY RLITAMFLHY GVIHLLLNMY ALWILGRNLE ASLGPARFLA
LYLISGLGGN VAAYLISAPN AATAGASTAI FGLFAALFVV GRRLGRDVSQ VLPILVINLV
FTLTVPGISI PGHLGGLVLG ALMAVILAYA PRSRRTLVQV AGGTVLVAAL LGLALIRTAA
LLA