| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4874 |
|---|
| Symbol | |
|---|
| ID | 5707566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 5525637 |
|---|
| End bp | 5526398 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641274270 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001539615 |
|---|
| Protein GI | 159040362 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | [TIGR00025] ABC transporter efflux protein, DrrB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0328295 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCAC ACGTCATCGG CGACACCGCT GCCCTGCTGG GGCGCTCCCT GCGCCACGTC
GGCCGCAGCC CGGACACCAT CATCACGACC ACGATCATGC CGATCGCGTT CATGCTGCTC
TTCGTCTACG TCTTCGGCGG CGCGATCGAC ACCGGGCCGG AGAAGTACGT GAACTATCTG
CTTCCCGGCA TCCTGCTCAT CACCGTGGCG TCCGGCATCT CCTACACCGC GTACCGGCTC
TTCATGGACA TGAAGTGCGG CATCGTCGAA CGGTTCCAGT CCATGCCGAT CGCCCGCTCG
TCCGTGCTGT GGGCGCACGT GCTGACCTCG CTGGTCGCCA ACCTGACCTC GCTCGTGGTG
GTGATGGTGG TCGCCCTCGC CATGGGCTTC CGCTCCGGGG CGGGCGTGCT GGCCTGGCTG
GCGGTAGCCG GGATCATGAC GCTGTTCACG CTGGCCCTGA CCTGGCTCGC CGTCATCCCG
GGGCTGACCG CGACGTCGGT GGACGGGGCG AGTGTGTTCT CCTATCCGCT CATCTTCCTG
CCGTTCATCA GCTCCGCGTT CGTGCCCACG GAGAGCATGC CCGGCCCGGT ACGCGCCTTC
GCCGAGAACC AGCCGGTAAC GTCCATCGTC GACTCGATTC GCGGCCTGTT GGCGCAGCAG
CAGGTCGGGG GCGATGTGTG GATCGCTCTC GCCTGGTGTG CTGGTCTGCT CGTCGTCGCG
TACGGAATCG CCATGGCCGT CTACCATCGC AAGGTCGGTT GA
|
|---|
| Protein sequence | MTAHVIGDTA ALLGRSLRHV GRSPDTIITT TIMPIAFMLL FVYVFGGAID TGPEKYVNYL
LPGILLITVA SGISYTAYRL FMDMKCGIVE RFQSMPIARS SVLWAHVLTS LVANLTSLVV
VMVVALAMGF RSGAGVLAWL AVAGIMTLFT LALTWLAVIP GLTATSVDGA SVFSYPLIFL
PFISSAFVPT ESMPGPVRAF AENQPVTSIV DSIRGLLAQQ QVGGDVWIAL AWCAGLLVVA
YGIAMAVYHR KVG
|
|---|
| |