| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4578 |
|---|
| Symbol | |
|---|
| ID | 5705361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 5196645 |
|---|
| End bp | 5197301 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641273989 |
|---|
| Product | UspA domain-containing protein |
|---|
| Protein accession | YP_001539336 |
|---|
| Protein GI | 159040083 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.911716 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000114407 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGCG GAGAGTACGT CACCGTGGTC CTGGCGTTGT GGGTCGGCGC CGGGCTGGCG
ACAGCGCTGT GGATGGGCCG GCGTGGTCAC CGGGATCCGC TGTGGCTGTT CCTTGCGGTG
GTCTTCGGCC CGGTGCTGGC GGTGATGGCC CCGGAACGCA TCGAGCGGTC CCCGCGGCTG
GTGTCGGCCG AGCCGCCGCA GGAGTCGGCC GACGGCGTCA CGGTCCTCGT CGGCGTGGAC
GGCTCCCCGG AATCCGACGC GGCGTTGCGG GCCGTGCTCG ATCTGCTGCC GGGCCGACTG
GGCCGGCTCA TCGCGGCGGA AGTCGTCGAC TACGACGCGG CGGACAGCGA CGACTGGCGG
GGCCGGCAGG CGGCGGCACG TGCACACTTC GCCGACGTGC ACACCGCGTG CGGCCAGCGG
AACGTCGAAT GCGAGGTGCT GGCCGGGCCA CCGGCGCAGG CGCTGCTGCG CTGCGCCCAC
GAGCAGGACG TCGACCTGAT CGCGGTGGGC CGGCGTGGCC GCGGCCTGTC GGTGCGCCTG
CTCGGCAGCG TCGCCGACGA GTTGACCCGT ACGGCGCCGG TGCCGGTGCT GGTCGTCGGC
GCCCACGCCG CGACCGAGCA GCCGCAAGCC GAAACGACAG CCACCGTACC CGGTTGA
|
|---|
| Protein sequence | MTRGEYVTVV LALWVGAGLA TALWMGRRGH RDPLWLFLAV VFGPVLAVMA PERIERSPRL
VSAEPPQESA DGVTVLVGVD GSPESDAALR AVLDLLPGRL GRLIAAEVVD YDAADSDDWR
GRQAAARAHF ADVHTACGQR NVECEVLAGP PAQALLRCAH EQDVDLIAVG RRGRGLSVRL
LGSVADELTR TAPVPVLVVG AHAATEQPQA ETTATVPG
|
|---|
| |