Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sare_4523 |
Symbol | |
ID | 5706013 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora arenicola CNS-205 |
Kingdom | Bacteria |
Replicon accession | NC_009953 |
Strand | - |
Start bp | 5110396 |
End bp | 5113935 |
Gene Length | 3540 bp |
Protein Length | 1179 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641273937 |
Product | GAF sensor hybrid histidine kinase |
Protein accession | YP_001539286 |
Protein GI | 159040033 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.522992 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00180703 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACCACGG CGAAGCCGCC GGTTGCGGAG CTGTCCGCAC CGGACCCCGA GGCGGTCCTC ATCGAGCTGA CCGAGGCGCT ACGGCGTGTT CGCCGCGGCG ATCTCAAGGT CCGGCTGCCC CGCCGGCCAG GTCGGGCTGG CGAGGTCGCG GACGCCTTCA ACGACGTGGT GTCGCTCCAG GAACGGCAGC ACCACGACCT GCGCCGGATC AGCCGGATCG TCGGCCAGGA CGGGCGGCTC AACGAACGCC TCGACGGCGA GGGCCTGGAC GGTTCCTGGG CGGAGGGGCA GCGGGCGGTC AACTCGCTCA TCGACGACCT CGGGCGCCCG ACCATCGAGA TCGCCCGAGT CATTGTCGCG GTCGCCGAGG GCGACCTGTC GCAGCACATG GCGCTGAAGC TGGACGACCG ACCGCTGCGC GGCGAGTACC TGGGCATCGG GCGCAGGGTG AACACGATGG TGGATCAGTT GTCGTCGTTC GCGGATGAGG TGACCCGGGT GGCCCGGGAG GTGGGTACCG AGGGGAAGTT GGGTGGTCAG GCCGATGTTC GGGGCGCCGC CGGCACCTGG AAGGACCTCA TCGACTCGGT GAACACCATG GGGTCGAACC TGACCGCGCA GGTACGTAAC ATCTCGCAGG TTTCGACGGC GGTGGCGACG GGTGATCTGG GTCAGAAGAT CACGGTGGAT GCGCAGGGCG AGATTCTGGA GTTGAAGAAC ACCGTCAATA CGATGGTGGA TCAGTTGTCG TCGTTCGCGG ATGAGGTGAC CCGGGTCGCG CGGGAGGTGG GTACCGAGGG GAAGTTGGGT GGTCAGGCCC AGGTGAAGGG TGTCTCCGGG ACGTGGCGGG ACCTCACCGA GAACGTCAAC CAGCTGGCCG GCAACCTGAC CAGCCAGGTA CGTAACATCT CGCAGGTTTC GACGGCGGTG GCGACGGGTG ATCTGGGTCA GAAGATCACG GTGGATGCGC AGGGCGAGAT TCTGGAGTTG AAGAACACCG TCAACACGAT GGTGGATCAG TTGTCGTCGT TCGCGGATGA GGTGACCCGG GTCGCGCGGG AGGTGGGTAC CGAGGGGAAG TTGGGTGGTC AGGCCCAGGT GAAGGGTGTC TCCGGGACGT GGCGGGACCT CACCGACAAC GTCAACTCGA TGGCGTCGAA TCTGACCTCG CAGGTGCGCA ACATCGCCTC GGTCACGACC GCCGTCGCAC GGGGCGATCT GGGTCAGAAG ATCACGGTGG ATGCGCAGGG CGAGATTCTG GAGTTGAAGA ACACCGTCAA TACGATGGTG GATCAGTTGT CGTCGTTCGC GGATGAGGTG ACCCGGGTCG CGCGGGAGGT GGGTACCGAG GGGAAGTTGG GTGGTCAGGC CCAGGTGAGG GGCGTCGCCG GGACGTGGCG GGACCTCACC GAGAACGTCA ACCAGCTCGC CTCCACCCTG ACCGTGCAGT TACGCACCAT CGCCCAGGTC TCCACGTCGG TGACCCGCGG CGACCTGACC CAGCGGATCG CGGTCGAGGC TCAGGGTGAG GTCGCCGAAC TGACGGACAA CATCAACCAG ATGATCGTCA CCCTCCGAGA GACGACCGAG GAGAACGCCG AGCAGGGCTG GCTGGACTCC AATCTGGCCC GCATCGGCGG GCTGCTCCAG GGCCAGCGGG ACCTCGGTGA GGTCTGCCGC ATGATCATGA CGGAGGTCAC TCCGCTGGTT GACGCACAGC TCGGCGCGTT TTTCCTGGTG GACGACTCCG AGGGCAGCGT CCGACTGCGG CTCGCCGCCT CGTATGGGTA CGTTGCCCGC GGGCAGGACG TGACGTTCGG GCCCGGTGAG GGCCTGGTCG GCCAGACGGC GCTGTCCCGG CGCACGATTC GGGTCAGCGG AGGGCCGGAC AACCCGCTCC GGCTCCGCTC CGGACTCGCC GACACGGCAC CGGCCGACCT GGTGGTGCTG CCGGTCATCT TCGAGGGCGA ACTGCTCGGC GTGATCGAGT TCGCCAGCAT GACGGCCCTC TCCGACCTCT ATCTCTCCTT CCTCGAGCGG CTGGTCCTCA CCATCGGCGT CGCGGTCAAC ACCATCCAGG CGAACCGGCG TACCGAGGAA CTGCTGTCCC AGTCGCAGCG GTTGGCCCAC GAGCTGCAGG AGCAGTCGGC CGAACTCCAG CGCACGAACG CGGAACTGGA GGAGAAGGCG AAGCTGCTCT CCGAGCAGAA GGGCAACATC GAGACCAAGA ACCGGGAGGT CGAGCTGGCC CGGCTCGGCC TGGAGGAGAC GGCGCAGCAG CTCACCCGGG CCTCGGCCTA CAAGTCGGAG TTCCTGGCCA ACATGAGCCA CGAACTGCGT ACGCCGCTGA ACTCGCTGCT CCTGCTGGCC CGACTGCTCG TCGAGAACCC GGAGCAGAAC CTCAGCCCGA AACAGATCGA GTTCGCCCGG ACGATCCACA GCGCCGGAAC GGACCTGCTC TCACTGATCG ACGACATCCT CGACCTGTCC AAGATCGAAG CGGGTCGGAT GGATGTCGAG CCGACCGGGA TCAGGTTTAC CGAGATCCGT AGCTATGTCG AGCAGGCCTT CGTGCCGCAG GCGCAGGAGA AGGGACTGGA CTTCGAGGTC CGGGTCAGCC CGGACCTGCC GGAGAAGATC GTCACCGACG CGCAGCGGCT GCAGCAGATC CTGCGGAACC TGATCTCCAA CGCGGTCAAG TTCACCGACG CTGGGGTGGT GCGACTGGCG ATCGCCCCGG CGCCGGAGTC GACTGTCTTC GACGTGCCCG CCCTGACCAA CGCGCGGCAG GTGATCGCAT TCACCGTCGC TGACACCGGG ATCGGTATCT CCGACGACAA GCTGTCGATC ATCTTCGAGG CGTTCCAGCA GGCCGACGGG ACGACGAGCC GCCGGTACGG CGGGACCGGC CTGGGCCTGT CGATCAGTCG GGATCTGGCC CGGCTGCTGG GCGGCGCGAT CGGCGTGTCC TCGGCACCCG GGCAGGGCTC GACCTTCACC CTCTTCGTAC CCGATGTCCT GGCCCCGGAC GCGGTCGTGG GGCCGGCACC ACCCTCACCC GCCCGGGCTG GTCTCCCGTC GTCGCTGCTG ATGCCCTCGG TGGAGCTGCT GCCCACCGCC GCCGAGGCGG CGGCGACCCG CCAGCTGGCC GGCGCCACCG TGCTGATCGT GGACGACGAC GTACGCACGG TCTTCGCCCT GACCAGCGCG TTGGAGCTGC ACGGGATGAC CGTGTTGTAC GCGGACAACG GGGCTGACGG CGTCCGCCTG CTGGCCGAGC ATCCGGAGGC GGACATCGTA TTGATGGACG CCATGATCCC CGATCAGGAC GGGTACGAGA CGACTCGGCA GATCCGGCGC AACCATCGGT TCGCCGACCT CCCGATCGTC TTCCTGACCG CGAAGGCGAT GCCCGGTGAC CGGGAGTCCG CGCTCGCGGC CGGAGGCAGC GACTACATCA CCAAGCCCGT TGACCTGGAC GAGTTGATCG AGCTCATGAC GACCTGGATC AGCGGTGGCC GGAGCGAGGA GGGCCTGTGA
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Protein sequence | MTTAKPPVAE LSAPDPEAVL IELTEALRRV RRGDLKVRLP RRPGRAGEVA DAFNDVVSLQ ERQHHDLRRI SRIVGQDGRL NERLDGEGLD GSWAEGQRAV NSLIDDLGRP TIEIARVIVA VAEGDLSQHM ALKLDDRPLR GEYLGIGRRV NTMVDQLSSF ADEVTRVARE VGTEGKLGGQ ADVRGAAGTW KDLIDSVNTM GSNLTAQVRN ISQVSTAVAT GDLGQKITVD AQGEILELKN TVNTMVDQLS SFADEVTRVA REVGTEGKLG GQAQVKGVSG TWRDLTENVN QLAGNLTSQV RNISQVSTAV ATGDLGQKIT VDAQGEILEL KNTVNTMVDQ LSSFADEVTR VAREVGTEGK LGGQAQVKGV SGTWRDLTDN VNSMASNLTS QVRNIASVTT AVARGDLGQK ITVDAQGEIL ELKNTVNTMV DQLSSFADEV TRVAREVGTE GKLGGQAQVR GVAGTWRDLT ENVNQLASTL TVQLRTIAQV STSVTRGDLT QRIAVEAQGE VAELTDNINQ MIVTLRETTE ENAEQGWLDS NLARIGGLLQ GQRDLGEVCR MIMTEVTPLV DAQLGAFFLV DDSEGSVRLR LAASYGYVAR GQDVTFGPGE GLVGQTALSR RTIRVSGGPD NPLRLRSGLA DTAPADLVVL PVIFEGELLG VIEFASMTAL SDLYLSFLER LVLTIGVAVN TIQANRRTEE LLSQSQRLAH ELQEQSAELQ RTNAELEEKA KLLSEQKGNI ETKNREVELA RLGLEETAQQ LTRASAYKSE FLANMSHELR TPLNSLLLLA RLLVENPEQN LSPKQIEFAR TIHSAGTDLL SLIDDILDLS KIEAGRMDVE PTGIRFTEIR SYVEQAFVPQ AQEKGLDFEV RVSPDLPEKI VTDAQRLQQI LRNLISNAVK FTDAGVVRLA IAPAPESTVF DVPALTNARQ VIAFTVADTG IGISDDKLSI IFEAFQQADG TTSRRYGGTG LGLSISRDLA RLLGGAIGVS SAPGQGSTFT LFVPDVLAPD AVVGPAPPSP ARAGLPSSLL MPSVELLPTA AEAAATRQLA GATVLIVDDD VRTVFALTSA LELHGMTVLY ADNGADGVRL LAEHPEADIV LMDAMIPDQD GYETTRQIRR NHRFADLPIV FLTAKAMPGD RESALAAGGS DYITKPVDLD ELIELMTTWI SGGRSEEGL
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