| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4408 |
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| Symbol | |
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| ID | 5705510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora arenicola CNS-205 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009953 |
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| Strand | - |
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| Start bp | 4981377 |
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| End bp | 4984226 |
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| Gene Length | 2850 bp |
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| Protein Length | 949 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641273827 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001539176 |
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| Protein GI | 159039923 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0610462 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCGAGCA ATGCTGGAAC CACCCGTCTG GTCATCGTCG AGTCCCCGGC GAAGGCCAAG
ACGATCTCGG GCTACCTCGG CCCGGGGTAC GTCGTGGAGG CCAGTTTCGG GCACGTCCGC
GACCTGCCGC GCAACGCCGC CGACGTGCCG GCGAAGTACA AGGGCGAGGC GTGGGCCCGG
CTCGGCGTCG ATGTCGACAA CGGCTTCCAC GCCCTCTACG TCGTCTCGTC GGACCGCCGG
CAGCAGATCA GCAAGTTGAC CAAGCTGGCC CGGGAGGTTG ACGAGATTCT CCTGGCCACG
GATGAGGACC GGGAGGGCGA GGCGATCGCC TGGCACCTGG TGGAGACGCT CAAGCCGAAG
GTGCCGGTCA AGCGGATGGT CTTCCACGAG ATCACCAAGC CGGCGATCCA GGCCGCGGTG
GCGAACCCGC GTGAGATCGA CCGGGACCTG GTCGACGCGC AGGAGGCCCG CCGCATCCTC
GACCGGTTGT ACGGCTACGA GGTGTCACCG GTGCTGTGGA AGAAGGTCAT GCCGAAGCTT
TCGGCGGGCC GGGTGCAGTC GGTGGCGACC CGCACCGTGG TCGAGCGGGA GCGCCAGCGG
ATGGCGTTCC GTACTGCCGA GTACTGGGAC ATCCTGGCCA CGCTGGCCGT CGAACAGGCC
GGCGAGGGCC CCCGCACCTT CAACGCCACC CTGGTGGCGC TCAACGGTGA CCGGATCGCC
GCCGGCAAGG ACTTCGAGCC GACCACCGGG CGGGTCCGTC CCGGCGCGGG TGTCGTCCAC
CTCGACGAGA GCGGGGCCCA CGGGCTGGCC GCCCGGTTGG CAGGTCGGCC ATTCACCGTC
ACCCGGGTCG AGGAGAAGCC CTACCGTCGC CGCCCCTACG CGCCGTTCAT CACCTCCACC
CTGCAACAGG AGTCGGCCCG CAAACTGCGC TTCTCCTCCC AGCAGACGAT GCGCACCGCG
CAGCGACTCT ATGAGAACGG CTACATCACC TATATGCGAA CCGACTCGGT GAACCTGTCG
GAGACCGCCA TCGCGGCGGC CCGCCGGCAG ATCGTCGAGT TGTACGGCGA GCGCAGTGTC
CCGCCGGAGC CGCGCCGCTA CACCGGCAAG GTGAAGAACG CGCAGGAGGC GCATGAGGCG
ATCCGCCCCG CGGGGGACAC CTTCCGCACC CCCGGTGAGC TGCGCAACGA ACTCTCGGTT
GAGGAGTACA AGCTCTACGA GTTGATCTGG CGGCGCACCA TCGCCTCCCA GATGACCGAC
GCGGTGGGTT TCAGTGTCTC GGTGCGTATC CGCGCCGTCA CCTCCGCCGG TGAGGAGGCC
GACTTCGGCG CCACCGGCAA GACCATCACC GACCCGGGTT TTCTCCGTGC CTATGTGGAG
TCCAGCGACG ACGAGAACGC CGAGGCGGAG GACGCCGAGC GGCGTCTGCC GACGCTGGTG
AAGGACCAGC CGCTTACCGG CGAGCAGCTG GTGGCGCAGG GTCACCACAC CCAGCCGCCC
GCCCGCTACA CCGAGGCGTC CCTGGTCAAA GCGCTGGAGG AACTGGGCAT CGGTCGCCCG
TCGACGTACG CGTCGATCAT GCAGACGATC CAGGACCGGG GGTACGTCGT CAAGCGTGGC
CAGGCGATGA TCCCGTCCTT CCTGGCGTTC GCCGTGGTCG GGCTGATGGA GCGGCACTAC
CCACGCCTGA TCGACTATGG CTTCACCGCC AGCATGGAGA ACGAGCTGGA CGAGATCGCC
GGTGGCGACC ACGCGGCGGT CGATTTCCTC ACCGCGTTCT ACTTCGGCAC CACCAACGGC
GCCGGTGACC AGGACATCGC CCGTTCCGGT GGGCTGAAGA AGCTGGTCAC CGAGAACCTC
AGCGACATCG ACGCACGGAG CGTCAACTCG ATACCCCTGT TCACCGACGA ACAGGGACGG
GTCGTCGTCG TCCGGGTGGG CCGCTACGGG CCGTACCTGC AGCGGGAACT ACCCGGCGAG
GCGGCGACGC CCGCCGACGG TGAGGAGGGC GGCGGCCAGG GCGACCGGGC ACCGATTCCA
GACGGTCTGG CACCCGACGA GCTGACCCCG GAGAAGGTGC ACGAGCTGTT CCTCGGCGGT
GGGGGCGAGC GCAAGCTCGG CGAGGACCCG GCCACCGGAG AGCCGATCCT GCTCAAGTCG
GGCCGGTTCG GCCCGTACGT GGCCAGCGGG GAGCGTAAGT CGTCACTGCT GCGCTCCCAG
TCGCCGGACG CGCTCACCCT CGAGGAGGCG TTGCGACTGC TGAGCCTGCC TCGCCTGGTC
GGTGTCGACC CGGAGGGCAA CGAGGTCTTC GCCAACAACG GCCGCTACGG ACCGTATGTC
AAGCGGGGCG AGGAGTTCCG GTCGCTGGAC TCCGAGGAGA AGATGTTCAC GGTCACGCTG
GATGAGGCGC TGGCCCTGCT GGCCGCCCCG AAGACCCGGC AGCGCCGGGC GCCCGCGCCT
CCACTGCGGG AACTGGGCGC CGACCCGCTG ACCGAGAAAC CGCTGGTCAT CAAGGATGGG
CGGTTCGGGC CGTACGTGAC CGACGGTGAG ACCAACGCGT CATTGCGGCG CGGGCAGACG
CCGGAGGCGT TGAGCCTGGA GCAGGCGTCG GAGATGCTCG CCGAGAAGCG GGCGAAGGGT
CCGGCGCCGC GGAAACGGGC GGCCAAGAAG GCCACGCCGG CCAAGAGGTC CACGCCGGCG
AAGAAGGCGG CGGCGACGAA GACCACCGCG ACGGGCAAAG CCACGAAGAA GACCGCCGCG
GCGACCAAGG TGGCGAAGAA GACGGCGACG GCGAAGACCA CAACGGCCAA GCAGGCGAAA
CCGAAGCGGG CGAGCAGCAC GACCGAGTGA
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| Protein sequence | MPSNAGTTRL VIVESPAKAK TISGYLGPGY VVEASFGHVR DLPRNAADVP AKYKGEAWAR
LGVDVDNGFH ALYVVSSDRR QQISKLTKLA REVDEILLAT DEDREGEAIA WHLVETLKPK
VPVKRMVFHE ITKPAIQAAV ANPREIDRDL VDAQEARRIL DRLYGYEVSP VLWKKVMPKL
SAGRVQSVAT RTVVERERQR MAFRTAEYWD ILATLAVEQA GEGPRTFNAT LVALNGDRIA
AGKDFEPTTG RVRPGAGVVH LDESGAHGLA ARLAGRPFTV TRVEEKPYRR RPYAPFITST
LQQESARKLR FSSQQTMRTA QRLYENGYIT YMRTDSVNLS ETAIAAARRQ IVELYGERSV
PPEPRRYTGK VKNAQEAHEA IRPAGDTFRT PGELRNELSV EEYKLYELIW RRTIASQMTD
AVGFSVSVRI RAVTSAGEEA DFGATGKTIT DPGFLRAYVE SSDDENAEAE DAERRLPTLV
KDQPLTGEQL VAQGHHTQPP ARYTEASLVK ALEELGIGRP STYASIMQTI QDRGYVVKRG
QAMIPSFLAF AVVGLMERHY PRLIDYGFTA SMENELDEIA GGDHAAVDFL TAFYFGTTNG
AGDQDIARSG GLKKLVTENL SDIDARSVNS IPLFTDEQGR VVVVRVGRYG PYLQRELPGE
AATPADGEEG GGQGDRAPIP DGLAPDELTP EKVHELFLGG GGERKLGEDP ATGEPILLKS
GRFGPYVASG ERKSSLLRSQ SPDALTLEEA LRLLSLPRLV GVDPEGNEVF ANNGRYGPYV
KRGEEFRSLD SEEKMFTVTL DEALALLAAP KTRQRRAPAP PLRELGADPL TEKPLVIKDG
RFGPYVTDGE TNASLRRGQT PEALSLEQAS EMLAEKRAKG PAPRKRAAKK ATPAKRSTPA
KKAAATKTTA TGKATKKTAA ATKVAKKTAT AKTTTAKQAK PKRASSTTE
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