| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4381 |
|---|
| Symbol | |
|---|
| ID | 5705072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 4952503 |
|---|
| End bp | 4954134 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641273803 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001539153 |
|---|
| Protein GI | 159039900 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000255213 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGGGA AACTCCTGAA GGTAACCGTC GCGGCGACGG CCACTGCCAT GTTGGTCACT
GCTTGCACCG GCGGTAACAG CGACGACCCA GCGGAAACGA ACGGTCAATC CGGTGGCGAG
CTACGCGTTT ACGCTTCGGA GCCGGCGTCC CTGGTACCGT CGGCCGCCAA TGATGAACCG
TCGATCTATG TGATCCGTCA GCTCTACCGT GGCCTGATCA AGTACAACGC CCAAACCGGT
GCGGCCGAAC ACGACCTGGC CGAGTCGATC GCGTCGGACG ACCACAAGCT TTGGACCATC
ACAATCAACG GTGGCTACAC CTTCGACAAC GGTGAGCCGG TCGACGCCGA GTCCTTCATC
CGGTCATGGA ACTACGCCGC TTACGGGCCG AACGCCCAGA GCAACGCCTA CTTCATGAAG
CGAATCGCCG GGTTCGACGA TGTTACGGCC AAGGATCCGG ACGGTGATGG TCCGAAGACG
GCCCCGGAGC CGAAGGCCAA GACGCTGTCG GGCCTGAAGA AGGTCGACGA CCTGACCTTC
ACCGTCGAGC TCAAGGAGCC GTTCACTGAC TTCCGGACCA CGCTCGGCTA CTCAGGCTTC
TTCCCGATGG CCCAGGCGTG CGTCGACGAT GAGGACGCGT GCAACGAGAC CCCGATCGGG
AACGGCCCTT ACAAGATCGA AGGCGCCTGG GAGCGTGGCG TCCAGATCAA CCTGACCCGT
AGTGACTCCT GGAAGGGCGA GCCGGGCAAG CCCGACAAGA TCAACTACCG GATCTTCGCG
GACGAAGGCT CTGCGTACTC CGCCTTCCAG GCCGGCGAGC TGGACGTGAT GTACACCCTG
CCGTCGGAGC GTTTCAAGGA CGCCAAGGCA AGCTACGGCG ACCGTCTGTA CGAGCAGCCA
GGCGACAGCC TGAACTACAT CGGCATGCCG CTGTACAACG AGAACTTCAC GGACAAGCGG
GTCCGTCAGG CGATCTCGCT GGCGATCGAC CGGCAGTCGA TCATCGACGC GGTGTTCGAC
GGCCGGTACA CCCCGGCTAC CGGCTTCATC GCGCCGACCT TCCAAAACGT CCGCGAGGGC
GTCTGCACGT ACTGCAGGAA GGACGTCGAG AAGGCCCAGG CGCTGCTCGC CGAGGCCGGT
GGCTGGAAGG GCGGCAAGCT GGTCCTGTGG GCCAACGCCG GTTCCAGTCA CGAAGCCTGG
CTGCAGGCAG CCGGCGACCA GATCAGGGCC GCCCTGGGCA TTGACTACGA GCTGAGGGTC
AACCTGCAGT TCCCCGAGTA CCTGGAGGCT GCCGACAACC GGAAGTTCAC CGGCCCGTTC
CGGCTCGGTT GGGGCCCGGA CTATCCGTCA CTGGAGACCT ACCTGGCTCC CCTGTATGGG
ACCGGGGCCG ACAGCAACAG TTCCACCTTC AGCAACCCCG AGTTCGACCG CCTGATGAAG
CAGGGTGACT CCGCCAGTTC CATCGAGGAG GCGGTCACCT TCTACCAGAA GGGTGAGGAT
ATCCTGGCGG AGGAGCTGCC GGTTATCCCG ATGTTCTGGC GCAAGGTGGG GGCGCTCTAC
AGCGAGAACG TCGACAACTT CGTCTGGAAC CAGTTCTCGG GCGCCGACTA TGGTGCGACC
TCGCTGAAGT AG
|
|---|
| Protein sequence | MRGKLLKVTV AATATAMLVT ACTGGNSDDP AETNGQSGGE LRVYASEPAS LVPSAANDEP
SIYVIRQLYR GLIKYNAQTG AAEHDLAESI ASDDHKLWTI TINGGYTFDN GEPVDAESFI
RSWNYAAYGP NAQSNAYFMK RIAGFDDVTA KDPDGDGPKT APEPKAKTLS GLKKVDDLTF
TVELKEPFTD FRTTLGYSGF FPMAQACVDD EDACNETPIG NGPYKIEGAW ERGVQINLTR
SDSWKGEPGK PDKINYRIFA DEGSAYSAFQ AGELDVMYTL PSERFKDAKA SYGDRLYEQP
GDSLNYIGMP LYNENFTDKR VRQAISLAID RQSIIDAVFD GRYTPATGFI APTFQNVREG
VCTYCRKDVE KAQALLAEAG GWKGGKLVLW ANAGSSHEAW LQAAGDQIRA ALGIDYELRV
NLQFPEYLEA ADNRKFTGPF RLGWGPDYPS LETYLAPLYG TGADSNSSTF SNPEFDRLMK
QGDSASSIEE AVTFYQKGED ILAEELPVIP MFWRKVGALY SENVDNFVWN QFSGADYGAT
SLK
|
|---|
| |