| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4324 |
|---|
| Symbol | |
|---|
| ID | 5706886 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 4885881 |
|---|
| End bp | 4889774 |
|---|
| Gene Length | 3894 bp |
|---|
| Protein Length | 1297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641273743 |
|---|
| Product | DNA-directed RNA polymerase subunit beta' |
|---|
| Protein accession | YP_001539096 |
|---|
| Protein GI | 159039843 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0115193 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTCGACG TCAACTTCTT CGACGAGCTG CGCATCGGCC TCGCCACCGC CGACGACATC
CGGCAGTGGT CCCACGGCGA GGTCAAGAAG CCGGAGACGA TCAACTACCG CACTCTCAAG
CCGGAGAAGG ACGGGCTTTT CTGCGAGAAG ATCTTTGGTC CTCAGCGGGA CTGGGAGTGC
TACTGCGGCA AGTACAAGCG GGTCCGCTTC AAGGGCATCA TCTGCGAGCG CTGCGGCGTC
GAGGTGACCC GATCGAAGGT CCGCCGGGAG CGGATGGGGC ATATCGAGCT GGCCGCCTCG
GTGACCCACA TCTGGTACTT CAAGGGTGTG CCGAGCCGGC TGGGCTACCT GCTGGACCTC
GCCCCCAAGG ACCTCGAGAA GATCATCTAC TTCGCCTCGT ACGTGGTGAC GAGCGTGGAC
GCCGAGGCGC GCCACCGGGA CCTCGCCACG ATCGAGAACG AGATTCTGGC CGAGAAGCGG
CAGTCCGAGA ACAGCCGCGA CTCGGAGATC GAGAAGCGGG CCGGCAAACT CGAGGCTGAT
CTGGCGGAGT TGGAGGCCGA GGGCGCCAAG GCGGACGTCC GACGCAAGGT CAAGGAGGGC
GGAGAGCGCG AGATGCGCCA GATCCGCGAC CGGGCCCAGC GTGAGATCGA CCGCCTGGAC
GAGGTGCTGG ACACCTTCCG CAAGCTGGAG CCGAAGCAAC TGGTCACCGA CGAGTTGCTG
TACCGGGAGC TGCGCGACCG GTTCGGCGAG TACTTCACCG GTGGTATGGG TGCCGAGGCG
ATCAAGGCGT TGGTCCAGAA CATGGACCTC GACGCCGAGG CCGAGAGCCT GCGGGAGACC
ATCCGCACCG GCAAGGGGCA GCGGAAGATC CGGGCGCTCA AGCGGCTCAA GGTGGTCGCG
GCGTTTCTGA ACACCCGCAA CTCGCCGCTC GGAATGGTGC TGGACTGCGT CCCGGTCATT
CCGCCGGATC TGCGCCCCAT GGTGCAGCTC GACGGTGGCC GCTTCGCGAC CTCCGACCTG
AACGACCTGT ACCGCCGGGT GATCAACCGG AACAACCGGC TCAAGCGGCT GATCGATCTC
GGTGCCCCCG AGATCATTGT CAACAACGAG AAGCGGATGC TCCAGGAGGC CGTTGACGCG
TTGTTCGACA ACGGCCGCCG TGGTCGGCCG GTCACCGGTC CGGGTAACCG TCCACTCAAG
TCGCTGTCGG ACATGCTCAA GGGCAAGCAG GGCCGGTTCC GCCAGAACCT GCTCGGCAAG
CGGGTCGACT ACTCGGGTCG GTCGGTCATC GTGGTCGGCC CGAAGCTCAA GCTGCACCAG
TGCGGCCTGC CCAAGCAGAT GGCGTTGGAG CTGTTCAAGC CGTTCGTGAT GAAGCGGCTG
GTGGACCTCA ACCACGCGCA GAACATCAAG TCCGCCAAGC GGATGGTCGA GCGGCAGCGG
CCGGTTGTCT GGGACGTGCT GGAGGAGGTC ATCGGCGAGC ACCCGGTGCT GCTCAACCGG
GCGCCGACCC TGCACCGACT GGGTATCCAG GCATTCGAGC CACAGTTGGT CGAGGGCAAG
GCGATCCAGA TCCACCCGCT GGTGTGCACC GCGTTCAACG CCGACTTCGA TGGTGACCAG
ATGGCGGTCC ACGTGCCGCT GTCGGCCGAG GCTCAGGCCG AGGCGCGGAT CCTGATGCTG
TCCTCCAACA ACATCCTCAA GCCGGCCGAC GGTAAGCCGG TGACCATGCC CACCCAGGAC
ATGATCATCG GTCTCTACCA CCTCACCCAC CGCACCTCCG GTGAGCGGGG TGAGGGCCGG
GCATTCAGCT CGGACGCCGA GGCCCGGATG GCGTTCGACA ACGGTGAGCT GCACCTGCAG
GCGCCGGTGA AGATCCGCCT GCGGGGTCTG GTCGGGGTCG AGACTGGCCC CGGTGCCGAG
TCGTGGACCG CGCCGGAGGG CTGGGTCGAG GGTGACCCGA TCACGGTGGA GACGACTCTC
GGCCGGGTCC TGTTCAACGA GGCCCTCCCC CCGGGGTACC GGTTCGTGAA CTACGAGATC
CGCAAGGGCC AGCTCTCCGC GATCGTCAAC GACCTCGCCG AGCGGTTCCC GAAGGTCGCC
CTCGCGGCTA CCCTCGACGG CCTCAAGGAG GCCGGCTTCC ACTGGGCCAC CTGGTCCGGC
GTGACCATCG GTATGGAGGA CGTGCTGGCG CCGCCGCGCA AGCGGGAAGT CCTCGATCGG
TACGAGAAGG AAGCCGACCG GATCGACAAG CAGTACCAGC GTGGTCTGAT GACCGCCGAG
GAACGCCGTG GTGAGCTCAT CGAGATCTGG ACCAAGGCGA CCAACGAGGT GGCCAAGGAG
ATGGACACCG CGCTCCCGCA GGAGAACCCG CTCTGGAAGA TGATCAACTC GGGGGCCCGC
GGTAACCTGC TCCAGCTCCG GCAGATCGCA GCGATCCGTG GTTTGGTGGC GAACCCGAAG
GGTGAGATCA TCCCGCGTCC GATCAAGGCG TCCTACCGGG AGGGCCTGTC CGTTCTGGAG
TACTTCATCT CCACGCACGG CGCCCGGAAG GGTCTCGCGG ACACCGCGCT GCGGACCGCC
GACTCGGGGT ACCTGACCCG TCGTCTGGTG GACGTCTCGC AGGATGTGAT CATCCGCGAG
GAGGACTGTG GCACGGACCG CGCCATTCCG ATGCAGGTGG GTCAGCAGAC CGGTGAGGCC
GGTTCGCTGG TCGTGCACGA GCACGCGGAG ACCAGCGTGC ACGCCCGTAC GCTGGCCGAC
GACATCAAGG GGCCGGACGG TACCGTCGTC GCCGAGCGGG GCGCGGACAT CAACTCGATC
TTGGTCGACA GGATCGTCGC CGCCGGGGTG GAGTCCGTCC GGGTCCGTAG CGTGCTCACC
TGCGAGTCGA AGCTGGGTGT CTGCGGCGCC TGCTACGGAC GTTCGCTGCC GACCGGCAAG
ACCGTGGATG TCGGCGAGGC GGTGGGTATC ATCGCCGCCC AGTCGATCGG TGAGCCGGGT
ACGCAGCTGA CGATGCGTAC CTTCCACACC GGTGGTGTCG CCGGTGAGGA CATCACCCAG
GGTCTGCCCC GGGTCCAGGA GATCTTCGAG GCCCGGATCC CGAAGGGCAA GGCGCCGATC
GCGGACACCC CGGGTCGGGT TCGGCTGGAG GACGGCGAGC GGTCCCGCAA GATCATCGTT
GTGCCGGACG ACGGCAGTGA CGAGATCGTC TACGACAAGA TCTCGAAGCG GGTCCGGCTG
CTGGCCAACG ACGGCGACCA CGTCGAGGTC GGCGAGAAGC TCACCGTGGG TACGATCGAC
CCGCACGAGC TGCTCCGCAT CCTCGGTCCG CGTGCGGTCC AGGTTCACCT GACCCAGGAG
GTCCAGGAGG TCTACCGCTC GCAGGGTGTG CTCATCCACG ACAAGCACAT CGAGATCATC
ATCCGGCAGA TGCTCAAGCG GGTGACGGTT ATCGACTCCG GTTCGACCGA GTTCCTGCCC
GGTGTCCTTG TGGACCGGGC GCTGTTCGAG TCGGAGAACC GTCGGCTCGT GTCCGAGGGT
GGCGAGCCCG CGGCGGGCCG TCCGGTGCTG ATGGGTATCA CCAAGGCGTC GCTGGCCACG
GACTCCTGGC TGTCGGCGGC CTCCTTCCAG GAGACCACCC GAGTGCTGAC GGACGCGGCG
ATCCACGCCC GCAGCGACTC GCTGATCGGC CTCAAGGAGA ACGTGATCAT CGGTAAGCTC
ATCCCGGCTG GTACTGGCAT CAGCAAGTAC CGCAACGTGC GGGTCGAGCC GACTGAGGAG
GCGAAGGCCA AGGTCTACTC GATGACCGGT TACCCGGAGA CCGATTACGG CTTCGGACCG
GCCAGTGGTC AGGCGGTCCC GCTGGACGAC TTCGACTTCG GGTCGTACCG CTAG
|
|---|
| Protein sequence | MLDVNFFDEL RIGLATADDI RQWSHGEVKK PETINYRTLK PEKDGLFCEK IFGPQRDWEC
YCGKYKRVRF KGIICERCGV EVTRSKVRRE RMGHIELAAS VTHIWYFKGV PSRLGYLLDL
APKDLEKIIY FASYVVTSVD AEARHRDLAT IENEILAEKR QSENSRDSEI EKRAGKLEAD
LAELEAEGAK ADVRRKVKEG GEREMRQIRD RAQREIDRLD EVLDTFRKLE PKQLVTDELL
YRELRDRFGE YFTGGMGAEA IKALVQNMDL DAEAESLRET IRTGKGQRKI RALKRLKVVA
AFLNTRNSPL GMVLDCVPVI PPDLRPMVQL DGGRFATSDL NDLYRRVINR NNRLKRLIDL
GAPEIIVNNE KRMLQEAVDA LFDNGRRGRP VTGPGNRPLK SLSDMLKGKQ GRFRQNLLGK
RVDYSGRSVI VVGPKLKLHQ CGLPKQMALE LFKPFVMKRL VDLNHAQNIK SAKRMVERQR
PVVWDVLEEV IGEHPVLLNR APTLHRLGIQ AFEPQLVEGK AIQIHPLVCT AFNADFDGDQ
MAVHVPLSAE AQAEARILML SSNNILKPAD GKPVTMPTQD MIIGLYHLTH RTSGERGEGR
AFSSDAEARM AFDNGELHLQ APVKIRLRGL VGVETGPGAE SWTAPEGWVE GDPITVETTL
GRVLFNEALP PGYRFVNYEI RKGQLSAIVN DLAERFPKVA LAATLDGLKE AGFHWATWSG
VTIGMEDVLA PPRKREVLDR YEKEADRIDK QYQRGLMTAE ERRGELIEIW TKATNEVAKE
MDTALPQENP LWKMINSGAR GNLLQLRQIA AIRGLVANPK GEIIPRPIKA SYREGLSVLE
YFISTHGARK GLADTALRTA DSGYLTRRLV DVSQDVIIRE EDCGTDRAIP MQVGQQTGEA
GSLVVHEHAE TSVHARTLAD DIKGPDGTVV AERGADINSI LVDRIVAAGV ESVRVRSVLT
CESKLGVCGA CYGRSLPTGK TVDVGEAVGI IAAQSIGEPG TQLTMRTFHT GGVAGEDITQ
GLPRVQEIFE ARIPKGKAPI ADTPGRVRLE DGERSRKIIV VPDDGSDEIV YDKISKRVRL
LANDGDHVEV GEKLTVGTID PHELLRILGP RAVQVHLTQE VQEVYRSQGV LIHDKHIEII
IRQMLKRVTV IDSGSTEFLP GVLVDRALFE SENRRLVSEG GEPAAGRPVL MGITKASLAT
DSWLSAASFQ ETTRVLTDAA IHARSDSLIG LKENVIIGKL IPAGTGISKY RNVRVEPTEE
AKAKVYSMTG YPETDYGFGP ASGQAVPLDD FDFGSYR
|
|---|
| |