| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4280 |
|---|
| Symbol | |
|---|
| ID | 5706992 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 4855694 |
|---|
| End bp | 4856320 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641273699 |
|---|
| Product | thiamine-phosphate pyrophosphorylase |
|---|
| Protein accession | YP_001539052 |
|---|
| Protein GI | 159039799 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0352] Thiamine monophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00693] thiamine-phosphate pyrophosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.147204 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00418182 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTCGTCCC TTGGACGCCT GCATCTGATA ACTGACAACC GTCCTGGACA GGACCCGCTC
GCCGTCGTTC GGGCTGCCCT GTCGGTGGCC CGGGCCGAAC TGGTCGTTCA GGTCCGGGTG
ACCGACGAAA CGACCGACCG GCAGGCGTAC GACCTGGCCC GCCGGGTGAC CGTGCTCTGC
GCCCGGTACG GCGCGACCTG CCTGGTCAAC GATCGGCTGC ACGTGGCCCT GGCGGTCGGC
GCCGACGGTG GACACGTGGG CGCCGACGAC CTGCCGGTCG GCGCGGCCCG CGCGGTGCTC
GGCTCCGCCG CCGTCCTCGG CGCCACCGCC CGCGAGGCGG ATACCGCTGT CGAGGCGGTC
GCCGCCGGGG CCAGCTACCT CGGCGTGGGG TCGGTGCACC CCACCACCTC GAAGGACGGG
CTGCCACCCC CGATCGGGGC GGCGGGGCTC CGAGCGGTCG CCGCCGCGGT CAGCGTGCCG
GTGATCGCCA TCGGGGGAGT GACCGCGGCG GACGTGCCCG ACCTGCGGGC AGCCGGCGCG
TATGGGGTGG CGGTGATCGC CGCGCTGTCC CACGCCGCTG ACCCCGCCCG CGCCACCGCC
GCGTTCGTCG AGGCACTGAC GTGCTGA
|
|---|
| Protein sequence | MSSLGRLHLI TDNRPGQDPL AVVRAALSVA RAELVVQVRV TDETTDRQAY DLARRVTVLC
ARYGATCLVN DRLHVALAVG ADGGHVGADD LPVGAARAVL GSAAVLGATA READTAVEAV
AAGASYLGVG SVHPTTSKDG LPPPIGAAGL RAVAAAVSVP VIAIGGVTAA DVPDLRAAGA
YGVAVIAALS HAADPARATA AFVEALTC
|
|---|
| |