| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4255 |
|---|
| Symbol | |
|---|
| ID | 5704387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 4828304 |
|---|
| End bp | 4829674 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641273674 |
|---|
| Product | nitrite transporter |
|---|
| Protein accession | YP_001539027 |
|---|
| Protein GI | 159039774 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2223] Nitrate/nitrite transporter |
|---|
| TIGRFAM ID | [TIGR00886] nitrite extrusion protein (nitrite facilitator) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.823889 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00256557 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGA CGAGCGTGCC CGCCACGACG GGGGACGAGG AGATCGACCT GCAACGCCGG
AAGGGTCGCT GGATCGGCTA CTGGGCGCCC GAGGACGACC GCTTCTGGCG GACCGCCGGC
CGGGCCGTCG CCCGGCGCAA CCTCATCTAC TCGATCTTCG CCGAGCACAT CGGGTTCTCC
GTCTGGCTGC TCTGGAGCAT CGTGGTGGTC CGGTTGGACG ACGTCGGATG GACGCTGACG
ACCAGCCAGG CGCTCTGGCT GACTGCCGTG CCCAGCGGTG TCGGCGCGCT GCTGCGACTG
CCCTATACCT TCGCCGTGCC GATTTTCGGC GGCCGGAACT GGACCGTCAT CTCCGCGCTG
CTGCTGATCA TCCCGTGTGC CGGGCTGGCG TGGGCGGTCC AGCATCCGGA AATCGGGTTC
ATGCCGCTGC TGCTGATCGC CGCCACCGCC GGCCTCGGCG GCGGTAACTT CGCCTCCAGC
ATGGCGAACA TCTCGTTCTT CTACCCCGAG CGGGAGAAGG GGTGGGCGCT CGGGTTGAAC
GCGGCCGGCG GCAACATCGG TGTCGCCGTG GTGCAGTTCC TGGTGCCTCA GGTGATCGTG
CTCGGTGGCG GCCTGGCGTT GGCCAGGGCC GGGCTGATGT ACCTTCCGCT CGCGGTGATC
GCCGCGGTCT GCGCCTTTCT GTTCATGGAC AACCTGGTCG AGGCCAAGGC GGACGTGGGA
TCGGTGTGGT CCTCGTTGCG GCACCGGGAC ACGTGGATCA TGTCATTGCT GTACATCGGT
ACGTTTGGTT CCTTCATCGG CTACTCGGCG GCCTTTCCGA CGTTGCTCAA CGGGGTGTTC
GGCCGACCCG ACATCGCGCT GTCCTGGGCG TTCCTCGGTG CGGCAGTGGG CTCGGTCTGC
CGACCCTTCG GGGGCCGCCT CGCGGACGCC ATCGGTGGCG CCCGGGTCAC CGTGGCCAGC
TTCGTGCTGA TGACCGGCGG TGCCTACCTG GCCCTGTGGT CGGTGCGGGA ACGCTGGCTG
GGAGTCTTCT TCCTGGCGTT CATGCTGCTG TTCGTGGCCA CCGGGGTCGG CAACGGGTCG
ACGTACCGGA TGATCTCCCG GATCTTCCAG GTGCAGGGGG AGAAACTCGG CGGCTCACCG
GAGATCATGC GGGCGATGCG CCGGCAGGCA GCCGGGGCAC TCGGAATCAT CTCCGCGGTC
GGTGCCTTCG GCGGGTTCCT GGTCCCGATC TGCTACGCAT GGGCGAAGTC GGCCTACGGC
AGCATCGAGC CCGCGCTGTG GTTCTATGTC GGCTTCTTCC TGGTGCTGAC GGTGCTGACG
TGGGGGGTGT ATCTGCGACC GGGGGCGCGG CTGACCGGGG ATCGGGTGTG A
|
|---|
| Protein sequence | MTTTSVPATT GDEEIDLQRR KGRWIGYWAP EDDRFWRTAG RAVARRNLIY SIFAEHIGFS
VWLLWSIVVV RLDDVGWTLT TSQALWLTAV PSGVGALLRL PYTFAVPIFG GRNWTVISAL
LLIIPCAGLA WAVQHPEIGF MPLLLIAATA GLGGGNFASS MANISFFYPE REKGWALGLN
AAGGNIGVAV VQFLVPQVIV LGGGLALARA GLMYLPLAVI AAVCAFLFMD NLVEAKADVG
SVWSSLRHRD TWIMSLLYIG TFGSFIGYSA AFPTLLNGVF GRPDIALSWA FLGAAVGSVC
RPFGGRLADA IGGARVTVAS FVLMTGGAYL ALWSVRERWL GVFFLAFMLL FVATGVGNGS
TYRMISRIFQ VQGEKLGGSP EIMRAMRRQA AGALGIISAV GAFGGFLVPI CYAWAKSAYG
SIEPALWFYV GFFLVLTVLT WGVYLRPGAR LTGDRV
|
|---|
| |