| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4196 |
|---|
| Symbol | |
|---|
| ID | 5703850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 4763803 |
|---|
| End bp | 4764567 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641273615 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001538968 |
|---|
| Protein GI | 159039715 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00656937 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAACGCCG AGCCCCGTAC AGACCTCGCC GCACACGTCG TTGTCGTCAC CGGCGCCGGA
TCTGGCATCG GCCGCGCCAC AGCACACACG TTCGCCCGCG CAGGCGCGCG GGTGCTGGGC
ATCGGCCGCC GTAAGGATGC CCTTGAGGAA ACCGCCGCCG GACACCCCGA GATCGCCGTC
CATCCGGCCG ACCTGAACGA CCCCGGCGCA CCGCAGGAAG CGGTTGACGC CGCAGTCGAC
CGCTGGGGAC AACTGGACAT CCTGGTCAAC AACGCCGGAG CTACCAAGAT CATGCCGCTG
GCACACACCA CGGCTGCGGG CATCGCCGCC CTGTTCGACC TCAATGTCGT CGCGCCCAGC
CTGCTGGCGC ACGCGGCACT ACCGCACCTG CGCCGGAGCC GCGGCTCGAT CGTCAACGTC
TCCAGTACCT ACGGCCACCG ACCCCTGCCA GGCGCCGCTC ACTACGCGGC CTCCAAAGCC
GCCCTCGAAC AGCTCACCCG TAGTTGGGCG ATGGAACTCG CGGCTGACGG TATCCGCGTC
AACGCCCTCG CTCCCGGCCC GACCGAAAGC CAGGCGCTGG CCGCCGCCGG ACTTCCCGAC
CCGGCCATCG AAGAGATCAA ACGTGAAGAG GCCGGACGTA TCCCCCTCGG TCGCCGCGGT
GATCCCGAAG AGGTCGCCAC CTGGATCCTG CGCCTGGCCG ACCCGGCCAC CACCTGGCTG
ACCGGACAGG TCCTCACTGT CGACGGCGGA CTCGAGCTGA CGTGA
|
|---|
| Protein sequence | MNAEPRTDLA AHVVVVTGAG SGIGRATAHT FARAGARVLG IGRRKDALEE TAAGHPEIAV
HPADLNDPGA PQEAVDAAVD RWGQLDILVN NAGATKIMPL AHTTAAGIAA LFDLNVVAPS
LLAHAALPHL RRSRGSIVNV SSTYGHRPLP GAAHYAASKA ALEQLTRSWA MELAADGIRV
NALAPGPTES QALAAAGLPD PAIEEIKREE AGRIPLGRRG DPEEVATWIL RLADPATTWL
TGQVLTVDGG LELT
|
|---|
| |