| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4062 |
|---|
| Symbol | |
|---|
| ID | 5704145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 4619094 |
|---|
| End bp | 4620668 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641273488 |
|---|
| Product | peptidase S1 and S6 chymotrypsin/Hap |
|---|
| Protein accession | YP_001538843 |
|---|
| Protein GI | 159039590 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.286322 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACT ACGAGTCCGA CCCACAGCGC CGGCAGGCCC CCGGGGACGC CGAGCCGTCG
CACCCCACCG TCGATCTGCC CCGCCTCGAG CGCGCCCAGT CCGACTCCTC GGCCTCGGTC
TCCGACGCGG CTTCCCCAGC GGGCCCCGCC GCGGCTGCGG CTTCCCCGGC GAGCCCCGCC
GCGCCGTCCG TCGGCGCCCC GACCGACCCC ACTGACGCCC GGTCCGGGTC GGACGAGCCC
GCTGTCGAGA ACCCCGTACC GGCCGCAAAC GCATCGCCGT CCGCCGACCC CTCCGCGCCG
CGATATCCCC AGTTCGGTGT CGGGCCTGCC GGCGGGCACG GTGGGCACCC GCACCCACCC
GGTTATCCGC AACACCCGAA CCCGGCCACC CTCTGGTATG GGCAGCAGAG CGCCGGCTGG
AGCGGGGGGC AACCCGGCGG GTACGGCCAG CCCTATCAGC CGGGCCAGCC GGCGCACCTG
GCCGGGGCGT CCATGCCGCC GTGGGCGGCG CCGCAGAGCG GCCCGCGCTC CGGCGGCCGG
GTGGCGAAGT TCGTCGGCGC TGGCGTTGCG GTGGTCGCCC TGATGTTCGG CTCTGGTGTT
GCCGGCGGCG CACTCGCGCT CGCCCTCGCC GGCGACTCCG GCATCACCCG AACCTACTCG
GCGGCCCCGA TCATCGATGG TGCCGACCTG CCGCGCATCG CCGCCGCGGT GCAGCCCAGT
GTGGTGTCGA TCGGCACCGG CAACGGCGAG GGCTCGGGTG TGATCCTCAG CACCGACGGC
TACGTGCTGA CCAACAACCA TGTGATCGCC TCGGCGAGCG GCGGCACCGT GCTGGTGACC
TTCGCCGACG GCGAGACGGC GCAGGCGAAG ATCGTCGGCA CCGACCCGAA GACCGACTTG
GCCGTCGTCA AGGCATCCGG GGTCAGCGAC CTGACGCCGG CGACGTTCGG CGACAGCGAC
GCGATGCAGG TCGGCGACCA GGTCCTCGCC CTGGGTAGCC CGTTGGGCTT GCAGGGGTCG
GTGACCGCGG GCATTCTCAG CGCCCGGGAC CGCACCATCC AGGCCGGTGG CTCGCCGCAG
GACCCGCGCC AGGGGGTCAC CTCGATCTCC GGGTTGCTGC AGACGGATGC GCCGATCAAC
CCCGGTAACT CCGGTGGCGC GCTGGTCAAC ACCCGGGGAG AGGTGATCGG GATCAACACG
GCGATCGCCA CCAGCGGTCA GGGCAGCACC GGCAACATCG GGGTCGGTTT CGCCATCCCC
AGCAACAAGG CCAATGACGT CGCCGGGAAG CTGCAACGGG GGGAGAAGGT CTCTCACCCC
ACCCTCGGTG TCAGCGTCAC CACCGCCGAC GGCGGTGGCG CCCTGGTGGC CGAGGTCCTC
CCCGACAGTG CCGCCGAGCG GGCCGGCCTC CAGCGCGGTG ACGTCATCAC CCGGTTTGGT
GACAAGGCGA TCGACGGCTC CGACGACCTG GTCGCCGAAG TCCAGGCCGG CAAGGTGGGT
GACCGGGTCG ATGTGACGTA CAAACGCAAC AATGCCGAAA CGACGGCAAC CGTGACGCTC
GCCGAAGCGT CCTAG
|
|---|
| Protein sequence | MTDYESDPQR RQAPGDAEPS HPTVDLPRLE RAQSDSSASV SDAASPAGPA AAAASPASPA
APSVGAPTDP TDARSGSDEP AVENPVPAAN ASPSADPSAP RYPQFGVGPA GGHGGHPHPP
GYPQHPNPAT LWYGQQSAGW SGGQPGGYGQ PYQPGQPAHL AGASMPPWAA PQSGPRSGGR
VAKFVGAGVA VVALMFGSGV AGGALALALA GDSGITRTYS AAPIIDGADL PRIAAAVQPS
VVSIGTGNGE GSGVILSTDG YVLTNNHVIA SASGGTVLVT FADGETAQAK IVGTDPKTDL
AVVKASGVSD LTPATFGDSD AMQVGDQVLA LGSPLGLQGS VTAGILSARD RTIQAGGSPQ
DPRQGVTSIS GLLQTDAPIN PGNSGGALVN TRGEVIGINT AIATSGQGST GNIGVGFAIP
SNKANDVAGK LQRGEKVSHP TLGVSVTTAD GGGALVAEVL PDSAAERAGL QRGDVITRFG
DKAIDGSDDL VAEVQAGKVG DRVDVTYKRN NAETTATVTL AEAS
|
|---|
| |