| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4039 |
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| Symbol | |
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| ID | 5705020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora arenicola CNS-205 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009953 |
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| Strand | - |
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| Start bp | 4596467 |
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| End bp | 4597426 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641273465 |
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| Product | DNA polymerase LigD polymerase subunit |
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| Protein accession | YP_001538820 |
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| Protein GI | 159039567 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02778] DNA polymerase LigD, polymerase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.437287 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0570226 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGTGAGG CCGAGGAGAC CCGGAACGGG GTCGCACTGA CGAACCTGAA CCAGCCGTTG
TTCGACGGGG CGGGCGCGAC CAAGCGTGAC CTGGTCAACT ACCTGGACGC GGTGCGCGAC
CGTATCCTGC CCCACCTGCG GGACCGGCCA CTGTCGGTGA TGCGGGTGCG GCCCGGCCAA
CCTCCGTTCA TGCAGAAGAA CCTTCCGAAG TACACCCCGG ACTGGATCCC CCGGACGGGA
GTGTGGGCGG AGGCGTCGCA CCGCGAGATC TCGTACGCCC TCTGCGGCGA CCGGCGCACC
CTGCTCTGGC TCGCCAATCA GCGGGCGGTC GAATTTCACC CCACCCTCGC CACGGTCGCG
GACCTGCGCT GCCCGACTCA CCTCGTGCTC GACCTGGACC CGCCGGAGGG CGCACCGTTC
GAGTCGGCGG TGGCCGCGGC CCTCCTGGTT CGACAGGCTC TCACCGAGGC TGGGCTTGTC
GGGGCGGTGA AGACCAGCGG CGCCAAGGGG GTGCACGTGT TCGTGCCGGT GACGGCGGGT
GCAACGGCGG AGGACCTTGC TGCCGCCACC CGAGCGCTCG CGCTCCGGGC TGCGCGCCTC
GATCCGGACC TCGCGACGAC CGCCTTCATT CGGGAGGACC GGGGCGGAAA AGTCTTCATC
GACTCCACCC GGGCTGGTGG GGCAACGGTT GTGGCCGCGT ACAGCCCGCG GCTGCGGCCC
GGTGTGCCGG TCTCCTTCCC GGTGCCCTGG GCTACCCTGC CGTCGGTCAC ACCCTCCGAC
TTCACGGTCC GGACCGCGCC CGAACTGGTC GCATCGGGGG ACCCGTGGGC GGACGCGATG
CCCACGGCCC AGCGACTCCC GGACGACCTG GTCGCCGAAG GCCACACCAT CCCGGTGGCC
CGGGTGCAGG CGATGCACGA GGGGAAGCGA CGGGCGCGCG CCCGGCGGGC CGCCGGCTGA
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| Protein sequence | MGEAEETRNG VALTNLNQPL FDGAGATKRD LVNYLDAVRD RILPHLRDRP LSVMRVRPGQ
PPFMQKNLPK YTPDWIPRTG VWAEASHREI SYALCGDRRT LLWLANQRAV EFHPTLATVA
DLRCPTHLVL DLDPPEGAPF ESAVAAALLV RQALTEAGLV GAVKTSGAKG VHVFVPVTAG
ATAEDLAAAT RALALRAARL DPDLATTAFI REDRGGKVFI DSTRAGGATV VAAYSPRLRP
GVPVSFPVPW ATLPSVTPSD FTVRTAPELV ASGDPWADAM PTAQRLPDDL VAEGHTIPVA
RVQAMHEGKR RARARRAAG
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