| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_3959 |
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| Symbol | |
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| ID | 5704910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora arenicola CNS-205 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009953 |
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| Strand | - |
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| Start bp | 4499170 |
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| End bp | 4500159 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641273384 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001538740 |
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| Protein GI | 159039487 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.624868 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.299323 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAGGA ACCGGGCAAC CGGCGCGAGC GAGGGGACCG TGGGCAACGT GGACAAGAAT
ATCGGCATGC GGACCGACGA GGTCGCCGAG GAGCGCGACC TGGTCGGCGT CTACCTTCAC
GAGATCTCCC GGACGCCGCT GCTGGACGCC GCCACGGAGG TCGATCTTTC CAAGGCTATC
GAGGCCGGAC TCTACGCCGA GCACCTGCTC GACGAGGACC GCGTCCCGGC CGGTGTCGAG
CGAGCGGAAC TCCAGCGGCT GGTCGCTGAG GGTGAGCGGG CCAAGGATCT GTTCATCCGT
GCCAACCTGC GACTGGTCGT GTCGATCGCC CGGCGGTACG TCCGTTCCGG GATGCCCATG
CTGGATCTGA TCCAGGAGGG CAACACCGGT CTGGTCCGGG CGGTCGAGAA GTTCGACTAC
GAGCGCGGCT TCAAGTTCTC CACCTACGCG ACCTGGTGGA TCCGTCAGGC GATCAGCCGG
GCGATCGCCC AGCAGGAGCG CACCGTGCGG TTGCCGGTGC ACCTGGTGGA GGATGTCAAC
CGGATGCGGA ATGTGGCCCG GCAGCTCACC CGGGAGCTTG GCAGCGACCC CGAGCCGGAG
CAGATTGCGA CGGCGCTCGG CGTCAGCGTC GAGCGGGTCA ACGAGTTGGT CCGCTGGTCG
CAGGACACCG TGTCGTTGGA CACACCGGTC GGCGACGACG GCGACACCAA CCTGGGGGAC
CTGGTCGCCG ACAGCGATGC GCCGTCACCG GAGGAGATTG TCCTCACTGG CCTGGAGCGG
CAGCGCATCG AGGGCCTGCT CAGTCACCTC GACGACCGGT CGGCCGGCAT CATGCGGGCC
CGGTACGGCC TCGAGGACGG CCGGGAGCAC TCGCTGACCG AGGTGGCCTC ACGCTTCTCG
CTTTCCCGGG AACGGATCCG ACAGCTGGAG ATCCAGGCAC TCGGCCGGCT GCGCGAGCTG
GCTCGTGCCG AAGGGCTTCA GGCAGCCTGA
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| Protein sequence | MARNRATGAS EGTVGNVDKN IGMRTDEVAE ERDLVGVYLH EISRTPLLDA ATEVDLSKAI
EAGLYAEHLL DEDRVPAGVE RAELQRLVAE GERAKDLFIR ANLRLVVSIA RRYVRSGMPM
LDLIQEGNTG LVRAVEKFDY ERGFKFSTYA TWWIRQAISR AIAQQERTVR LPVHLVEDVN
RMRNVARQLT RELGSDPEPE QIATALGVSV ERVNELVRWS QDTVSLDTPV GDDGDTNLGD
LVADSDAPSP EEIVLTGLER QRIEGLLSHL DDRSAGIMRA RYGLEDGREH SLTEVASRFS
LSRERIRQLE IQALGRLREL ARAEGLQAA
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