| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_3900 |
|---|
| Symbol | |
|---|
| ID | 5705838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 4440446 |
|---|
| End bp | 4441501 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641273325 |
|---|
| Product | 4-hydroxy-2-ketovalerate aldolase |
|---|
| Protein accession | YP_001538682 |
|---|
| Protein GI | 159039429 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR03217] 4-hydroxy-2-oxovalerate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.577323 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGGC TCTACCTACA GGATGTGACG CTGCGGGACG GGATGCACGC CATCGCCCAC
CGCTACACCG CTGACCAGGT ACGCACGATC GCCGCCGCGC TCGACGCCGC CGGGATAGCC
GCGATCGAGG TGGCGCACGG TGACGGGCTT GCCGGATCGA GTGTCAACTA CGGGCACGGC
GCGGCCAGTG ACGCGGACTG GATCGCGGCG GCGGCCGAGG TGCTGACCAC CGCGCGGCTG
ACCACGCTGC TGGTGCCCGG CATCGGCACC ATCGCCGATC TGAGGGCAGC GCGGGAACTT
GGCGTGACCA GCGTGCGGAT CGCCACCCAC TGCACCGAGG CCGACATCTC CGCCCAGCAC
ATCAGTTGGG CGCGGGAGAA CGGGATGGAC GTCTCCGGGT TTCTGATGAT GTCGCACATG
AACGACCCGG CGGGACTGGC GGCGCAGGCC AAGCTGATGG AGTCGTACGG GGCGCACTGC
GTCTACGTCA CCGACTCCGG CGGTCGGCTG CTGATGTCCG ACGTGGCCGA GCGGGTCGAC
GCGTACCGTC AGGTGCTCGA ACCAGAGACG CAGATCGGCA TTCACGCCCA CCACAACCTG
TCCCTCGGCG TGGCGAACAG CGTGATCGCC GTCGAACACG GCCGGATTCT CGGGGACGGG
CCGTTGGGCG CTCCGGCCGG CCGAACCGTC CGGGTGGACG CCTCGCTCGC CGGGCAGGGC
GCGGGCGCGG GTAATGCACC GCTCGAGGTC TTCGTCGCGG TCGCCGAGCT GCACGGCTGG
GAGCACGGCT GCGACGTGTT CGCGCTGATG GATGCGGCCG AGGATCTGGT CCGGCCGTTG
CAGGACCGAC CGGTGCGGGT TGATCGGGAG ACGCTCTCCC TGGGATACGC GGGCGTCTAC
TCCAGCTTCC TGCGGCACGC CGAGCGGGCC GCCGAACGCT ACGGCGTGGA CGTCCGCTCG
ATCCTGATCG AGCTGGGCCG GCGCCGGATG GTCGGTGGCC AGGAGGACAT GATCGTGGAC
GTGGCGCTCG ACCTGGCCGG CAGGGAGAAG ACGTGA
|
|---|
| Protein sequence | MTRLYLQDVT LRDGMHAIAH RYTADQVRTI AAALDAAGIA AIEVAHGDGL AGSSVNYGHG
AASDADWIAA AAEVLTTARL TTLLVPGIGT IADLRAAREL GVTSVRIATH CTEADISAQH
ISWARENGMD VSGFLMMSHM NDPAGLAAQA KLMESYGAHC VYVTDSGGRL LMSDVAERVD
AYRQVLEPET QIGIHAHHNL SLGVANSVIA VEHGRILGDG PLGAPAGRTV RVDASLAGQG
AGAGNAPLEV FVAVAELHGW EHGCDVFALM DAAEDLVRPL QDRPVRVDRE TLSLGYAGVY
SSFLRHAERA AERYGVDVRS ILIELGRRRM VGGQEDMIVD VALDLAGREK T
|
|---|
| |