| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_3877 |
|---|
| Symbol | |
|---|
| ID | 5707474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 4419726 |
|---|
| End bp | 4420388 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641273301 |
|---|
| Product | endopeptidase Clp |
|---|
| Protein accession | YP_001538660 |
|---|
| Protein GI | 159039407 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
|---|
| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.645227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00150579 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC TGAGCCTGCC GCCCCAGTTC GCGGCCGTGC ACAACCGCTA CGTCCTGCCG
TCATTCGTCG AGCGCACGTC GTACGGGGTT AAGGAGTCCA ACCCGTACAA CAAGCTTTTC
GAGGACCGAA TCATCTTCCT CGGGGTCCAG GTGGACGACG CGTCGGCCAA CGACGTGATG
GCTCAGTTGC TGACGCTGGA GGGCACTGAC CCGGACCGCG ACATCATCAT GTACATCAAC
TCGCCGGGTG GCTCGTTCAC GGCCATGACG GCGATCTACG ACACCATGCA GTACGTCCGG
CCGGACATTC AGACGGTCTG CCTGGGGCAG GCGGCCAGTG CTGCCGCAGT GCTGCTCTCG
GCAGGCACAC CGGGCAAGCG GATGGCGTTG CCGAATTCGC GGATCATCAT CCACCAGCCG
GCCACGGAGG GGGGCTACGG GCAGGGGTCG GATATCGAGA TCCAGGCCCG GGAGATCCTA
CGGATGCGTA CTCAGCTGGA GGAGATGCTC TCCCGCCACT GCAACCAGCC GGTCGAGAAG
GTCCGCAAGG ATATTGATCG AGATAAGATC ATGACGGCTG AGGAATCCCG CGAGTACGGG
CTGGTCGACA CGATCCTCAC CAGCCGAAAG AAGGGCCTGC TGGCTGCCAA CGCCGCCAGC
TGA
|
|---|
| Protein sequence | MTDLSLPPQF AAVHNRYVLP SFVERTSYGV KESNPYNKLF EDRIIFLGVQ VDDASANDVM
AQLLTLEGTD PDRDIIMYIN SPGGSFTAMT AIYDTMQYVR PDIQTVCLGQ AASAAAVLLS
AGTPGKRMAL PNSRIIIHQP ATEGGYGQGS DIEIQAREIL RMRTQLEEML SRHCNQPVEK
VRKDIDRDKI MTAEESREYG LVDTILTSRK KGLLAANAAS
|
|---|
| |