| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_3520 |
|---|
| Symbol | |
|---|
| ID | 5704648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 4062734 |
|---|
| End bp | 4063276 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641272947 |
|---|
| Product | NUDIX hydrolase |
|---|
| Protein accession | YP_001538313 |
|---|
| Protein GI | 159039060 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1051] ADP-ribose pyrophosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00645734 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCGCC GCTCGCGCGT CACCGCACGT GCCGTCGCAT ACCAGGTCTT CTACCGACTC
CCACTGCCGG TGCGGCGTCG CCTGGTCCGG CTTGCCGTGC CGAAATACAT CGTGGGTGCG
GTCACCCTGG TCCGTGACTC CGAGGCAACC GGTACGGGCC GGCTGCTCCT GCTGCGCCAA
CCGCCCGGCC GAGGTTGGAC CCTGCCGGCG GGGCTGTTGC AGCGGCGGGA GGCGCCGGTG
CTCGGCGCGA GCCGCGAACT GTACGAGGAG ACCGGCGTCC GGCTGTCCCC ACGCGAGCTA
CAGCCAGCGG TACCGAACGC CATCGTCCAC GACAAGGGGT GGGTGGACGT GGTGTTCACC
GCTGAGGTGC CGGCGTCGAC CACCGCCCTC CGGGTCGACG GGGCGGAGGT CCTCGAAGCC
GCCTGGCACC CGCTGGACGC CCTACCCCGG TTGACCTGGC CCACGGCCCG CCTGCTCGGC
TACTACGACA TCGGCCCGTT CGCGGGGCAG TTCCCGCCAG CGGTGCCCGA CACCCGGCCG
TGA
|
|---|
| Protein sequence | MLRRSRVTAR AVAYQVFYRL PLPVRRRLVR LAVPKYIVGA VTLVRDSEAT GTGRLLLLRQ
PPGRGWTLPA GLLQRREAPV LGASRELYEE TGVRLSPREL QPAVPNAIVH DKGWVDVVFT
AEVPASTTAL RVDGAEVLEA AWHPLDALPR LTWPTARLLG YYDIGPFAGQ FPPAVPDTRP
|
|---|
| |